PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10022015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 24376.7 Da PI: 4.8756 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.6 | 7.5e-19 | 69 | 118 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f+tae Aa a+++a+ +l+g Lus10022015 69 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAAFALRG 118 9*******.**********44465..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-29 | 68 | 126 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.2E-33 | 68 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.051 | 68 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 68 | 127 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.7E-13 | 69 | 118 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.69E-19 | 69 | 125 | No hit | No description |
PRINTS | PR00367 | 7.4E-11 | 69 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.4E-11 | 92 | 108 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MDNHHYQNDC SNYLPFNEDD TEEMLLFRLL INHQSDSDSS AAEEPSSSSS SSSEHLQCSP 60 QDSEATAAYR GVRKRPWGKY AAEIRDSTRN GVRVWLGTFD TAEAAALAYD QAAFALRGSA 120 AVLNFSAEIA RRSLQDIGYK GGCYSSPVLE LKKRNSAMRK AVRGRRSKRK DKAAAEVVEG 180 TSTVVFDDLG AEYLEEIMAI AENTSMISST SNADDDQHWW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-27 | 69 | 128 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10022015 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021811101.1 | 3e-59 | ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_023767742.1 | 9e-60 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 3e-57 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2J6L579 | 2e-58 | A0A2J6L579_LACSA; Uncharacterized protein | ||||
STRING | Lus10022015 | 1e-163 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-42 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10022015 |
Publications ? help Back to Top | |||
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