PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10021860
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 326aa    MW: 36542.3 Da    PI: 9.8654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10021860genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.86.8e-10150202247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47 
                      + W t+E++ll+ avk++G  +W+++a++++          t++ c+ ++q++
      Lus10021860 150 QTWGTWEELLLAFAVKRHGFASWESVAAELQtktslpqVLATAERCRQKYQDL 202
                      78*****************************99999998899*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-4148203IPR009057Homeodomain-like
SuperFamilySSF466894.95E-5148205IPR009057Homeodomain-like
SMARTSM007170.0037148205IPR001005SANT/Myb domain
PfamPF002491.9E-9150202IPR001005SANT/Myb domain
CDDcd001672.63E-4151202No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRNTSHPSPP SSSFSWSIVR ASVPRLSRQP LAQQQEEGLR HNRKSPVCRH SDGRRQTSRL  60
DLQHRHPLRC GRPRHDDSHY GLRVYRHGTS VRPQSLRKGN RKGPVLEPGG AKRQTEILNN  120
NNPFQFMAEE SLGHHQLRCQ SSSAADEQSQ TWGTWEELLL AFAVKRHGFA SWESVAAELQ  180
TKTSLPQVLA TAERCRQKYQ DLNRRAYPSP ASLSAAAPSK KRSLQLKVKK LEDEREHGSQ  240
EKDEGKLSKP DLPLERHRSE ADAKLSVSMS SRESDRDNRS VNESNSTAWG RVEFNGVGSE  300
EGGGWGEVGR SEDERVEFEE GGGGD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10021860
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011002322.12e-31PREDICTED: muscle M-line assembly protein unc-89-like isoform X3
STRINGLus100218600.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.12e-19DNA-binding bromodomain-containing protein