PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10021762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 271aa MW: 29369.4 Da PI: 7.9494 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 2.9e-19 | 39 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l+++v+++G+++W++I+r+++ gR++k+c++rw + Lus10021762 39 KGPWSAEEDRVLIHLVNRHGPRNWSLISRYIN-GRSGKSCRLRWCNQ 84 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.1e-16 | 93 | 135 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed ++ a++++G++ W+tIar ++ gRt++ +k++w++ Lus10021762 93 PFSPAEDHTILAAHARYGNR-WATIARLLP-GRTDNAIKNHWNST 135 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.685 | 34 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.08E-31 | 36 | 132 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-15 | 38 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-18 | 39 | 84 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-23 | 40 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.74E-15 | 41 | 83 | No hit | No description |
PROSITE profile | PS51294 | 20.748 | 90 | 140 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-13 | 90 | 138 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.7E-14 | 93 | 135 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.88E-10 | 93 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-22 | 93 | 139 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MDPMLHNNNN MCSTSSTTSD SSSSDSAATG SAKRTDRIKG PWSAEEDRVL IHLVNRHGPR 60 NWSLISRYIN GRSGKSCRLR WCNQLCPTVQ HRPFSPAEDH TILAAHARYG NRWATIARLL 120 PGRTDNAIKN HWNSTLKRRA FAGHGQTSSS SPPQAAVFHQ RAASDGNYST QEYCWNYGEG 180 SLSPAVPAAV VDVDEEEALT TLTLGPPGMG SGGGGQGMSN AAEERRAESM PAGFWDVMRG 240 VIAKEVREYV NSTMSSEESP TPTAAASYYH * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-39 | 38 | 140 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10021762 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301201.1 | 3e-88 | transcription factor MYB73 | ||||
Swissprot | O23160 | 7e-54 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | B9GNY7 | 7e-87 | B9GNY7_POPTR; Uncharacterized protein | ||||
STRING | Lus10021762 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5074 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23290.1 | 7e-56 | myb domain protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Lus10021762 |
Publications ? help Back to Top | |||
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