PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10020913 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 353aa MW: 38679.5 Da PI: 7.0738 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 172 | 221 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g Lus10020913 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 221 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.43E-34 | 171 | 231 | No hit | No description |
SuperFamily | SSF54171 | 3.6E-23 | 172 | 230 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-38 | 172 | 235 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.3E-32 | 172 | 230 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 172 | 229 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.5E-14 | 173 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 173 | 184 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-11 | 195 | 211 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MAATMEFFSS GPVQSDLYGG SELMEALEPF MKSASSPSSS APPPPPPPSF MPSPETLVSS 60 SFPPPSYSYG DYISFSSPSS FPAAALPQFP PPQQQQAFIY PDGSNGFFST QDPFLYQQPA 120 PVHPMQYQIQ TDNINNNLSF QNLPAQQNTL SFLSPKAFPM KLTGSPPKAT KLYRGVRQRH 180 WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GDFARLNFPN LRHQGSLIEG 240 KFGEYKPLHS TVDAKLQAIC QSLAETAKKK GKAVGKKKSS KKKDEVVVVK EEKVSPVATD 300 HSDFSGGSSS SPLSDLTFPD YQDAAAPLDL DSGNLNLEKY PSYEIDWDSI LS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 6e-21 | 171 | 229 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10020913 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021638221.1 | 1e-123 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 2e-78 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | K9UTK3 | 1e-118 | K9UTK3_JATCU; Ethylene-responsive element binding-factor | ||||
STRING | Lus10020913 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 1e-52 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | Lus10020913 |
Publications ? help Back to Top | |||
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