PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018787
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family bHLH
Protein Properties Length: 467aa    MW: 51074.4 Da    PI: 6.5919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018787genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.21.5e-13322368455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Lus10018787 322 NHVEAERQRREKLNQKFYALRAIVPNiS------KMDKASLLGDAITYINDLQ 368
                  799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.1E-3848227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.926318367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.21E-15321372No hitNo description
SuperFamilySSF474597.2E-18321384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-11322368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-17322377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-15324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MGENFWSSSD EKATAESILG SEACEFLISS NSKLPSTELV SSPSNLGLQQ GLHQLVEGTE  60
WNYVIFWHAS ATESSSVHLL TWGGGICRDP KSASGGKLEG GGEKKREEAK KLVLQKLRSL  120
GSTTRVVVSL DGVSDVEMFY LASMYFRFWS DSTTSHGAVE SYKSGRSIWV SDRANCLDQY  180
QLRSVLAESA GFQTVVFVPV KSGVLELGSV KQIYEESSLV KSAATIFGES TNKVCPKIFG  240
RELSLGSSKP RSMSISFSPK VENELVFNSD SYTIQELNAG QVYGSSSNGC SGSGTAELAI  300
GDERKPRKRG RKPANGREEP LNHVEAERQR REKLNQKFYA LRAIVPNISK MDKASLLGDA  360
ITYINDLQAK IKVMETEPGG NNKHGMMPEI DFHPRQDDAI VTVSYPLVDH PVGSIIEKFR  420
EHQVTAHECN VSSTEEGKIV HTFSIRTQSS AAEQLKQKLE AALVSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29316377263Transcription factor MYC2
5gnj_B8e-29316377263Transcription factor MYC2
5gnj_E8e-29316377263Transcription factor MYC2
5gnj_F8e-29316377263Transcription factor MYC2
5gnj_G8e-29316377263Transcription factor MYC2
5gnj_I8e-29316377263Transcription factor MYC2
5gnj_M8e-29316377263Transcription factor MYC2
5gnj_N8e-29316377263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194101GGKLEGGG
2303311RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018787
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8307525e-58EU830752.1 Linum usitatissimum clone LU0010B01 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021676931.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-155MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A343IVG00.0A0A343IVG0_HEVBR; LMYC14
STRINGLus100187870.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-149bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]