PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10018011
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WOX
Protein Properties Length: 433aa    MW: 47879.1 Da    PI: 7.8879
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10018011genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.49.3e-22115174357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Lus10018011 115 SRWNPTPEQLRTLEELYRRgTRTPSADQIQHITAQLrrygKIEGKNVFYWFQNHKARERQ 174
                  8*****************99**************************************97 PP
2Wus_type_Homeobox115.62.3e-37113176265
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        +++RW+PtpeQ++ Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
        Lus10018011 113 SSSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKR 176
                        579***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003897.2E-6112179IPR001356Homeobox domain
PfamPF000462.1E-19115174IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-9115174IPR009057Homeodomain-like
SuperFamilySSF466892.74E-12115180IPR009057Homeodomain-like
CDDcd000867.07E-7116176No hitNo description
PROSITE profilePS5007111.013120175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MWMMGYNDAG NGYAVPHDHH QFNNGSRKLR PLIPRPFLSS SSTTAAASIV VPGSVTANSD  60
HHHHHLSAFN HHNHHLGSTT AAEHSKRDNI NNNINTYELN QLQGVGGAGV VVSSSRWNPT  120
PEQLRTLEEL YRRGTRTPSA DQIQHITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM  180
DGSTSTPDIV HLRCPGEPVN GTSYEAGDQQ QLLLQNNKSW GAMNCTASEE AIPIPSCTRG  240
EEERLVLHEE GRRNNFMEER NATWQHMIQL SCPPPLTPTT TTPTTTITTS SAKIHHDASN  300
ITTPTSPPST TTAATSTVKL MVNKASGQHH HLNILTSQYG LVAVNPTGYH HQQIYLPPPP  360
APPTIKEPAD GTLELFPLGR NGGNDVASKK GTQGEDIDDD VNKFIMATAT TDNNHLSNNS  420
SFQFFEFLPL KN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10018011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100180110.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.18e-41WUSCHEL related homeobox 1