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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016245 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 229aa MW: 24640.1 Da PI: 8.8358 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.6 | 1e-15 | 158 | 205 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaar 50 ++y GVr+++ +g+W+Ae r+ + + r +lg+++taeeAa a+++a+ Lus10016245 158 CRYIGVRQRP-SGKWAAEMREEAKsG--GCRTWLGTYDTAEEAAMAYDRAA 205 689*******.7******99954524..4999*****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.03E-14 | 158 | 196 | No hit | No description |
Pfam | PF00847 | 1.8E-12 | 158 | 205 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-14 | 159 | 207 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.2E-20 | 159 | 227 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.0E-21 | 159 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.558 | 159 | 221 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-8 | 160 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.3E-8 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MPEASNSCGG TDPSGTSSNL DFWYNLYFGK EVDASKQEGV QQVASGSNLE ADWGYVFDDL 60 QKGKERRRRK RDYSHGSGVN SASDLSEALS SISAALSLSS SDSSRKGDYS EKGEDESGLK 120 ILGLARMGRI RMIGPCSSSG FGAKSSQDRR TGKSKSKCRY IGVRQRPSGK WAAEMREEAK 180 SGGCRTWLGT YDTAEEAAMA YDRAAASSQF GHVGKIKLNF PDLQYGSS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 160 | 221 | 6 | 63 | ATERF1 |
3gcc_A | 4e-14 | 160 | 221 | 6 | 63 | ATERF1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016245 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Lus10016245 | 1e-165 | (Linum usitatissimum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-10 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10016245 |