PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10016139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | MYB | ||||||||
Protein Properties | Length: 329aa MW: 36684.9 Da PI: 8.3661 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.9e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+d+++++G+g +W + +++ g++R++k+c++rw++yl Lus10016139 14 KGPWSPEEDAKLKDYIEKFGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 38 | 4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ Lus10016139 69 GEFSDDEDRIICSLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.19 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.12E-27 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.731 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.93E-8 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKDYIE KFGTGGNWIA LPHKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSDDEDRIIC SLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKIMSI 120 SPHNFPNKHH HPLQRSKPFH HFHPSSSSLV PQANFNFLSS FITSPPPITI TNGFDPMVNN 180 NFPSNPTTLL QTLQDGTSTS TSTLLSTKQL YNGTPSNNLL VFGSGGNDHQ VASCSSNSDG 240 SRGKDGGQQQ VKQEESNIYS QSYGGYGDHH QQKFMLSYGN GFDEFGGGGG VHLEEEVKKM 300 IINDQDHHDN SNHMVNVVDQ EKAMYYYY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10016139 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002314299.1 | 2e-98 | transcription factor RAX2 | ||||
Refseq | XP_012064720.1 | 2e-98 | transcription factor RAX2 | ||||
Refseq | XP_023911785.1 | 1e-98 | transcription factor RAX2-like | ||||
TrEMBL | A0A067LHA7 | 4e-97 | A0A067LHA7_JATCU; MYB family protein | ||||
TrEMBL | B9HQM8 | 5e-97 | B9HQM8_POPTR; Uncharacterized protein | ||||
STRING | Lus10016139 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 8e-77 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Lus10016139 |