![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lus10016026 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 243aa MW: 27057.5 Da PI: 7.8874 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.7 | 1.1e-19 | 99 | 159 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R++++++ql++Le+ F + n++p +e+++e++ +l ++ e+ V++WFqNrRa+ k+ Lus10016026 99 RQRWAPKQSQLQILERIFSEcNSNPGKERIKEITVELskygHVRESSVYNWFQNRRARCKR 159 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 86.8 | 2.4e-28 | 98 | 161 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+++Q++iLe+++++ +P ke+i++it eL++yG++++ V++WFQNr+aR ++kq Lus10016026 98 SRQRWAPKQSQLQILERIFSECNSNPGKERIKEITVELSKYGHVRESSVYNWFQNRRARCKRKQ 161 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 13.912 | 95 | 160 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-16 | 97 | 163 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.3E-13 | 97 | 164 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.71E-17 | 98 | 162 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.2E-17 | 99 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.39E-11 | 99 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MREQQQPERR LQLGNGGGGE EGGTISNNGA ALIGNGLGVK VMTDEQMEML RKQISVYSAI 60 CDRLVQMHTS LALNRHEFPG MLQYGDPLSA CGSSKIPSRQ RWAPKQSQLQ ILERIFSECN 120 SNPGKERIKE ITVELSKYGH VRESSVYNWF QNRRARCKRK QSAPTPRTGN FDVEAAARVV 180 DRAAAAAAKQ KIPEDDDNHN SPLIVDQLYF HTPEIGIDQL IGKLEVCEGF NLYYPEQQNG 240 PS* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 152 | 160 | RRARCKRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lus10016026 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041212.1 | 4e-65 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 5e-45 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B9H5J3 | 3e-63 | B9H5J3_POPTR; Uncharacterized protein | ||||
STRING | Lus10016026 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-43 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Lus10016026 |
Publications ? help Back to Top | |||
---|---|---|---|
|