PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10014054
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 250aa    MW: 27562.5 Da    PI: 8.1407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10014054genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20119168255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr+++ +g+W++eIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  Lus10014054 119 NYRGVRQRP-WGKWASEIRDPR----RaTRVWLGTFETAEEAARAYDKAAIEFRG 168
                  59*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.85E-36118176No hitNo description
SuperFamilySSF541711.18E-22119177IPR016177DNA-binding domain
PfamPF008475.0E-14119168IPR001471AP2/ERF domain
SMARTSM003809.1E-40119182IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-33119176IPR001471AP2/ERF domain
PROSITE profilePS5103225.198119176IPR001471AP2/ERF domain
PRINTSPR003671.4E-12120131IPR001471AP2/ERF domain
PRINTSPR003671.4E-12142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MQNSNSPNLR STTSHTHFDS PSMSSSRLSQ QEELDIMVSA LRHVVSGTTT TTAVSPNTTP  60
FHFHIPQPAI LDTCTVCGNQ GCLGCDIFPP NQEDQNSNKK NNTKSKSTTT AVRKRGKKNY  120
RGVRQRPWGK WASEIRDPRR ATRVWLGTFE TAEEAARAYD KAAIEFRGPR AKLNFPFPDH  180
SQLQQSGSEK KEKIQEEQRN GKTGGSSELG DQEDFQEWMM MLMDFSGGDS SDSAGTTGTV  240
CTSSGNLCF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-25118177161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10014054
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012066876.12e-71ethylene-responsive transcription factor ERF109
SwissprotQ9SZ069e-39EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A1L6CB102e-70A0A1L6CB10_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A1L6CB792e-70A0A1L6CB79_VERFO; AP2/ERF domain-containing transcription factor
STRINGLus100140540.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-31redox responsive transcription factor 1
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]