PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011731
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 229aa    MW: 24626.2 Da    PI: 7.0206
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011731genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.25.5e-15251355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Lus10011731  2 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 51
                 9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.9E-33165IPR001471AP2/ERF domain
PROSITE profilePS5103219.335159IPR001471AP2/ERF domain
CDDcd000181.95E-25261No hitNo description
PRINTSPR003674.7E-5213IPR001471AP2/ERF domain
PfamPF008471.9E-10251IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-18260IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-19259IPR001471AP2/ERF domain
PRINTSPR003674.7E-54161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDVAAIKFR GMNAVTNFDI  60
TRYDVERIMA SNTLLAASLL GNPPDESRTS HHLMVLYHHQ HQNQSSDHYN KQESLIATDN  120
NISAVHNQEV EEPAGGKIQV SNASSLVTSL NSSREASPHP SAAAANSLTM LFGMAPSSSS  180
SSSSAKLLFG SDHSSNTSSS WIPSPGGQLR TAAVPLPHMP VFAAWTDG*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011731
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021649956.13e-67AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-53CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1L6CB197e-64A0A1L6CB19_9ROSI; AP2/ERF domain-containing transcription factor
TrEMBLA0A2K1XNJ72e-63A0A2K1XNJ7_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZM015e-63A0A2K1ZM01_POPTR; Uncharacterized protein
STRINGLus100117311e-168(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.12e-45AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]