PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10011037
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family SRS
Protein Properties Length: 271aa    MW: 29897 Da    PI: 10.3857
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10011037genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70221.46.9e-073683551
       DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathv.kstWvpaakrre 51
                 + +C +CGn a+  C ++ C+ CC      C+ hv k+   p +k  +
  Lus10011037 36 RPKCTQCGNLARSRCPYQSCKSCCSKAKNPCHIHVlKANATPPYKAPS 83
                 579*******************************94555555555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051422.4E-43883IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAASSPAPMI NTSDSSLTPA AVSSGSQPKT VRHVNRPKCT QCGNLARSRC PYQSCKSCCS  60
KAKNPCHIHV LKANATPPYK APSATMISFD QPSAESSPAM SSLRAASFVQ KLSNSFTLLN  120
NAQTPHLRKT PMTKESVAIK ITLEKQNEAY NRYVQNIRLL EEALSMRLMQ GSSSQDVTIT  180
DSDNAAAKKR KQLIVDEWLK KLEEWELTRR PEKTKTWSNR RASTSKNEAD SRKGMDDYSS  240
KLVRTVEVSD QGIFSRVDAH FASLAKIARK *
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10011037
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011032005.12e-59PREDICTED: uncharacterized protein LOC105130965
TrEMBLB9SS312e-56B9SS31_RICCO; Uncharacterized protein
STRINGLus100110370.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.12e-37