PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10008939
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family AP2
Protein Properties Length: 491aa    MW: 53663.1 Da    PI: 4.9626
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10008939genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11139194255
          AP2   2 gykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                   ++GV++++++gr++A+++d  s+n+ ++k+ + g ++ +e Aa+ ++ a++k++g
  Lus10008939 139 AFRGVTRHRWTGRFEAHLWDkSSWNNmHNKKGRQGAYDEEEAAARTYDLAALKYWG 194
                  58******************7777**98888888********************98 PP
2AP253.55.8e-17237289156
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+++++g+
  Lus10008939 237 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFNTQEEAAEAYDMAALEYRGA 289
                  89****99**********988422...5**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.02E-15138203No hitNo description
SuperFamilySSF541713.07E-13138203IPR016177DNA-binding domain
SMARTSM003801.1E-16139208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-10139202IPR001471AP2/ERF domain
PROSITE profilePS5103217.767139202IPR001471AP2/ERF domain
PfamPF008478.6E-8140194IPR001471AP2/ERF domain
PRINTSPR003671.6E-5140151IPR001471AP2/ERF domain
PfamPF008473.1E-12237288IPR001471AP2/ERF domain
CDDcd000187.73E-24237298No hitNo description
SuperFamilySSF541711.37E-17237297IPR016177DNA-binding domain
PROSITE profilePS5103218.848238296IPR001471AP2/ERF domain
SMARTSM003808.1E-26238302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-19238296IPR001471AP2/ERF domain
PRINTSPR003671.6E-5278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MKSPPSNDKS TTKNNKRQRK IISPSSSSSS LSSLTSNSSC SSNSSNNSSP PSPSCSCSSS  60
PCSSCDPSAV IVHPPPPPPN HEEKPAAPPK AAKRRRRTQS SKKLTSNNNG GDHPPKSNDE  120
DKIDDPLPPP SAQGKRSSAF RGVTRHRWTG RFEAHLWDKS SWNNMHNKKG RQGAYDEEEA  180
AARTYDLAAL KYWGSATTLN FPVEGYEKEM EEMSKVSREE YLASLRRRSS GFSRGVSKYR  240
GVARHHHNGR WEARIGRVLG NKYLYLGTFN TQEEAAEAYD MAALEYRGAN AVTNFDVANY  300
VDRLKSKGDQ FLQPISDVAV AEVAPEDDQE AAELYINDNA AKLEPLPLPS SSSSIEQEAA  360
EVAMMMDMPL PPEMPPTTTT TTNNGGSMME LLELENDGNW SFCFEYPEEN NAASSQLASE  420
EGCCILPELF DVDGGGFQLE DIDYLVFDSY PPPVAVDDDD AGKRVKGKLL SEEDLSRSPS  480
CSTTTSVSCN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894PKAAKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10008939
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649911.11e-108PREDICTED: ethylene-responsive transcription factor WRI1-like
TrEMBLA0A371H4481e-107A0A371H448_MUCPR; Ethylene-responsive transcription factor WRI1 (Fragment)
STRINGLus100089390.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98593241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.39e-87AP2 family protein