PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10007719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | AP2 | ||||||||
Protein Properties | Length: 576aa MW: 63108.7 Da PI: 8.1932 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 37.3 | 6.9e-12 | 215 | 271 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+a++ a++k++g Lus10007719 215 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEDKAARAYDLAALKYWG 271 78*******************77776664346655.77***99*************98 PP | |||||||
2 | AP2 | 43.3 | 8.8e-14 | 316 | 365 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+ ++ a+ k++g Lus10007719 316 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAESYDVAAIKFRG 365 9***************988532...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.54E-14 | 215 | 281 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-9 | 215 | 271 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.41E-18 | 215 | 279 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.0E-12 | 216 | 280 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.056 | 216 | 279 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-21 | 216 | 285 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 217 | 228 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 314 | 374 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.34E-24 | 314 | 375 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-18 | 315 | 373 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.913 | 315 | 373 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-31 | 315 | 379 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.2E-9 | 316 | 365 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.7E-6 | 355 | 375 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MKMDLPSDHP LYITGQQQGP FLHHLNHSPL TVMPLKSDGS LCIHPPTSTT TSSSSSSPKL 60 EDFLGAGAGR PDHHHNIPSL TLDSYYNINN QEDTNSPFHF HTHNLSSSSS YYPAAFHWIT 120 PSCFPNFDNH NNHLQDLQAA CCVGGDLQSL TLSMSPGSQS SSVTATASNN NNSTTTTTQQ 180 QCVTTESKKR ALPEKPAQKQ TVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK 240 EGQTRKGRQG GYDMEDKAAR AYDLAALKYW GPSTHINFPL ENYHKELEEM KNMSRQEYVA 300 HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFTTQE EAAESYDVAA 360 IKFRGANAVT NFDITRYDVE KIMASNTLLA GDLARRKTKE LDTTSSMDIP QAAAVGYLTT 420 TSDNNSTSPH NNNGNVTSLL EWNAMLYGSN NNHHEAGLES GGNGFMRVSS SSPFHDLIAM 480 ESSLSNGLVD MTAKLGGTHS TSSNPSSLVT SLSSSREGSP EKVVNTSTTA AAATMLFGNK 540 PPLASSKYVS PVTSSSTIPP WFQANLPMFA SWNDA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10007719 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021284854.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q84Z02 | 1e-144 | CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5 | ||||
TrEMBL | A0A2I0KVU3 | 0.0 | A0A2I0KVU3_PUNGR; Uncharacterized protein | ||||
STRING | Lus10007719 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF916 | 34 | 114 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-133 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10007719 |
Publications ? help Back to Top | |||
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