PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004369
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family ERF
Protein Properties Length: 311aa    MW: 34843.5 Da    PI: 4.9566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004369genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.6e-19172222255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdps+ g   r +lg+++++ +Aa+a+++a+ kl+g
  Lus10004369 172 HYRGVRQRP-WGKYAAEIRDPSQKG--SRMWLGTYDSPIDAARAYDRAAFKLRG 222
                  7********.**********97644..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-31171231IPR001471AP2/ERF domain
SMARTSM003801.7E-36172236IPR001471AP2/ERF domain
PROSITE profilePS5103224.052172230IPR001471AP2/ERF domain
PfamPF008473.0E-12172222IPR001471AP2/ERF domain
CDDcd000184.25E-19172231No hitNo description
SuperFamilySSF541712.29E-22172231IPR016177DNA-binding domain
PRINTSPR003671.7E-13173184IPR001471AP2/ERF domain
PRINTSPR003671.7E-13212232IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MADGLLELQR QLFDDDQLFL SGCESSSSST TNTFSSNAAS TCGSAISVSD YYFDDYEIEL  60
LDFAKEPNEH EIIQLDTVLN YPVVIDLTSP KFPIPNPTFS DLESKPKIAS VPQFSLDYFN  120
FETQRKPSKS NHKPTEWIRF GGDDDDCGIQ LLGVERDETR SRGGSNSKEG RHYRGVRQRP  180
WGKYAAEIRD PSQKGSRMWL GTYDSPIDAA RAYDRAAFKL RGRKAILNFP AEAAKYKLLE  240
PTAAAAVQEG GNSVDSGRKR RREEDGEEER RVKAAADFPT SESSIGSSSR MHMEIWNEIS  300
RRSSDLGFWC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-27169230263ATERF1
3gcc_A6e-27169230263ATERF1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1257261RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10004369
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGLus100043690.0(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-35ethylene responsive element binding factor 5