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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003601 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 278aa MW: 31274.4 Da PI: 4.6245 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.7e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f +aeeAa+a+++ ++k++g Lus10003601 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNSAEEAARAYDKEALKIRG 124 9*******.**********954...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.66E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.6E-38 | 75 | 138 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.5E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 75 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.76E-33 | 76 | 133 | No hit | No description |
PRINTS | PR00367 | 2.6E-11 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-11 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 278 aa Download sequence Send to blast |
MCGGAIIADF IPRNRNRNLT AADLWPESFF SKASPSDTHD QPASLPAKRS HQTSSGCAQS 60 DNNKGEPVKK QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNSAEE AARAYDKEAL 120 KIRGKKAKVN FPNEESINYS NIHPPIQILQ SNNQHDPIIL DSYPESCNFG FDLNQIEDYP 180 SSTGWNNNNG GYGAGEFLGV KEEEEEEVVP ESKIHSSEES EQTSEVQILS EELMAYENYM 240 KFYQIPYMEG ESVSRQSAAQ ESVVGDLWNF DDDVDSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 76 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 9e-22 | 76 | 138 | 15 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003601 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002523125.1 | 2e-93 | ethylene-responsive transcription factor RAP2-2 | ||||
TrEMBL | B9SAV6 | 5e-92 | B9SAV6_RICCO; Uncharacterized protein | ||||
STRING | Lus10003601 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 8e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Lus10003601 |