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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lus10003562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
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Family | ERF | ||||||||
Protein Properties | Length: 246aa MW: 27043.9 Da PI: 5.3983 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 98 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + + r++lg+f+t+eeAa a+++a+++l g Lus10003562 98 AYRGVRTRP-WGKYAAEIRDSTR---HgVRVWLGTFDTPEEAALAYDQAALSLQG 148 69****999.**********422...25***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-22 | 97 | 157 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.66E-29 | 97 | 157 | No hit | No description |
PROSITE profile | PS51032 | 22.721 | 98 | 156 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.5E-30 | 98 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-35 | 98 | 162 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.1E-13 | 98 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 99 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-10 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MLDPYYNYYS SSSSPSPLDC LSSPPPQTHY WSPYGGELQQ QEEEPSNFLL CPPSNSTSSS 60 DPCSHALPPP VEEATSSSGK KKKQTKNNNS TTTVYKSAYR GVRTRPWGKY AAEIRDSTRH 120 GVRVWLGTFD TPEEAALAYD QAALSLQGSR AVLNFPAEEV SQSLEEIGCG LGKCSSPAEA 180 LKQTHYVKRK ALTRKRKGKQ SVVDQVDLEV TNSSPVITRE EVVEFEDLGS AFLEQLLFES 240 STTNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-28 | 99 | 158 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lus10003562 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024189920.1 | 7e-48 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 2e-46 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A2P6R5M0 | 2e-46 | A0A2P6R5M0_ROSCH; Putative transcription factor AP2-EREBP family | ||||
STRING | Lus10003562 | 0.0 | (Linum usitatissimum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF311 | 33 | 199 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 5e-44 | ethylene response factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Lus10003562 |
Publications ? help Back to Top | |||
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