PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10002879
Organism
Linum usitatissimum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family MYB_related
Protein Properties Length: 1113aa    MW: 122992 Da    PI: 9.2861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10002879genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.8e-074668326
                     SS-HHHHHHHHHHHHHTTTT-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWkt 26
                     +WT+eE e++++a +++G++ W++
      Lus10002879 46 KWTKEELERFYKAYRKHGKD-WEK 68
                     8*****************99.*86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.1E-54268IPR009057Homeodomain-like
CDDcd001670.001744668No hitNo description
SMARTSM011353.0E-18574660IPR033471DIRP domain
PfamPF065841.2E-15599659IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MAPSRKSRSV NKRFSGIDEV DTNDGAEYAN KSRQKKRKWT GKLGPKWTKE ELERFYKAYR  60
KHGKDWEKAY LSLPKGYASA AGLIAMMTDH YSNQVDSDSE QEVNEGPSTS HKPQKRARTA  120
KGSAVSPVTD LSKSLSAASN YGCLSLLKRR RSESRPWAVG KRTPRVPVSY SYDKEKEERY  180
ISPMRQGLKL KGGAFDDNND DDGDDDVAHR LALALTVASQ RGPTPQVSQT LTRKKGSSSS  240
AQNGEQMHAD SEMTSAKLRC SEMDDSGCEL SLGSTEADTG DYTRDKRFLK GKMYQRWRSE  300
QEESMDNHLD EIKEACSGTE EGQKPAGKGR FDAEVTNAKL QRSSYDKVPK KRSKKVLFGE  360
GEDIALDALQ TLADLSLRLP EGDTESSVHV QEGKTVNVAK SKLKGNSPAS GIKVTPSKSN  420
KQAKSTQNVI ALPELEGSNQ VNAGPRKRRN KPLQSKTSEK EQHSGPHLGE SQKVKVVDDV  480
NTSIDDAKPS HNATSGKQKR STKLPERTSS NADPGRESHD SGPSAAQAVS SNQVILPTKV  540
RSRRKISTPK TLLEKDTKTC ENITHVQSKI STPSFPDRPL PAKEKLSNCL SSRRLRQFSL  600
GKPRRFSRQF LKEEKKKLYQ YRESVREHYT ELRAGTREGL PTDLARPVSV GQRVIALHPR  660
TREIHDGSVL TVDHNRCCVR FDQPELGFEF VMDIDCMPLN PEENLPASLT RHGLGIKKYM  720
ENLNECKTSA LQAENAMEGY IKFHQENLDA TNGFSHIPPP NFHTLRQSQG LSLGLATPVI  780
TGFGETINTQ AANAQPSIHT HNQAKEADIQ ALSELTRALE KKIPRNSLRY SAVSTRERKL  840
MSSKLNVQDA VVSELKRLNE DVLESQNNGE KNNLRDSESF KKHYAALSSA LSSLRQRNTY  900
QVITPAIPMM TTGDPILYYS SFNPHPTEEV QDSGSHVAEI VESSRSKAQI MVDAAMQAVT  960
SLNKEGSNIE SIEEAIDFVN NQLSIDDLTT QSSRPPHPEN STQGALGGSQ DQSSSGTANV  1020
EANHMSDTKS SKYLSDLNEA QIPSDLISQS VATLLMIQKC TERQFPPSDI AQVLDSAVAN  1080
LKPSCSQNLP VYADIQKCMG IIRNQILALI PT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapLus10002879
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021634970.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A067KV210.0A0A067KV21_JATCU; Uncharacterized protein
STRINGLus100028790.0(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding