PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014908
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 325aa    MW: 36214.7 Da    PI: 9.951
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-12372PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.22.8e-114478339
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkq 39
                     +WT eE e++++a +++G++ Wk++a+++  +R  ++
        Lsa014908 44 PWTDEEVERFYKAYRKYGKD-WKKVAAMVR-TRNSEM 78
                     8*****************99.********9.998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-124088IPR009057Homeodomain-like
PROSITE profilePS512939.8254093IPR017884SANT domain
SMARTSM007172.0E-64189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-74379IPR009057Homeodomain-like
PfamPF002491.8E-94479IPR001005SANT/Myb domain
CDDcd001672.62E-84479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAPTRKSRSV NRRYSDYVEV SPSKNVANKS GRQKRKLSDM LGSPWTDEEV ERFYKAYRKY  60
GKDWKKVAAM VRTRNSEMVE ALYTMNRAYL SLPEGTASVV GFIAMVSDHY NAMEGSDNDQ  120
ESHDIPKPIH KPKKRSHGLL QQNGGEEQLH SRLVVGSSGR SLPQLKRRES DGCTVRKRTP  180
XFPYKSSSRR DNNNIGNYPS PYKRSQRREV DDVAHGAALA LTEASQRGGS PHVSQSPYHM  240
KSTPLKGRQK ILDTVRTKRH GNLIDEELFE GSSGSGGAEN EGYQKGRKFY GQKDDNDLDD  300
GGEACSGTGE GLAVGVGGKF DENIX
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132136KKRSH
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736599.10.0protein ALWAYS EARLY 3-like
TrEMBLA0A2J6K9G50.0A0A2J6K9G5_LACSA; Uncharacterized protein
STRINGGLYMA10G29481.22e-88(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-52DNA binding