PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa014721
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family FAR1
Protein Properties Length: 720aa    MW: 83441 Da    PI: 4.8644
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695669PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.81.5e-22109192189
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                k+Yn YAke+GF +r+++s ++++++e   + ++C++eg+++ ++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH +
  Lsa014721 109 KYYNCYAKELGFGIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEAS-----TRRKETRTGCMAMIRLRLIESNRWRVDEVKLEHNHLF 192
                69****************************************98877.....8999*******************************77 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-19109192IPR004330FAR1 DNA binding domain
PfamPF105511.8E-26311397IPR018289MULE transposase domain
PROSITE profilePS509669.334597633IPR007527Zinc finger, SWIM-type
PfamPF044347.2E-5608631IPR007527Zinc finger, SWIM-type
SMARTSM005753.4E-7608635IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MENNSDKSEE LIEDDGGDLD IDSNQVFGIG NNDVETESLF GIEGDDMEND NELVLDIETN  60
EHENGNEQIL EFERNDLENG NHDQENVPEH NSIPPIVGME FESYEDAYKY YNCYAKELGF  120
GIRVKSSWTK RNSKEKRGAV LCCNCEGFKT LKEASTRRKE TRTGCMAMIR LRLIESNRWR  180
VDEVKLEHNH LFDPERAQNS KSHKRAESVK RKSEPIAEVE VRTIKLYRTP TMDTVCYGSS  240
NERDFDNEFG KAKRLNLNKG DTKIIQDYFC RVQLINPNFF YIMDFSDDGF LKNVFWIDSR  300
ARASYNYFGD VIALDTTCLK NKYNVPLVVF VGSNHHGQTI PLGFALLADE SQQTYTWLLR  360
TWLTCMAGRP PQTIITDQST TLQTVITEIF PRAHHRLFLP LVIESILENF GNLELFQTVL  420
SNIIYNSIKV DEFELAWEDM IDRFAVRDND MLRKLFDDRE RWVPVYLKDT FLAGMLTFQP  480
VESTESTVPF FHGYVHQETS LKEFFEMHDL VIQNKIQKEA FDDRESTQST PKLKTICRYE  540
SQLAKIYTKE LFSRFQFEVE MMSNCFSVAQ VNTNGSIVTY MITEQESGAE GNTVRNMEVM  600
YDKIGVEVRC ICSCFNFKGY LCRHALLVLN HNGIEEIPGQ YVLSRWRKDF KRVYVPDLGS  660
DSVDTGNLVQ WFVQLHKRAL QVVEEGMTSQ EHYMAAWQSF KESLNKVRLV ADKNGQSGQS
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761325.10.0protein FAR1-RELATED SEQUENCE 8-like
RefseqXP_023761331.10.0protein FAR1-RELATED SEQUENCE 8-like
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLA0A251VDH30.0A0A251VDH3_HELAN; Putative FAR1-related sequence 8
STRINGEMJ182250.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]