PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Lsa013919 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | MYB_related | ||||||||||||||||
Protein Properties | Length: 573aa MW: 64862.8 Da PI: 7.667 | ||||||||||||||||
Description | MYB_related family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.6 | 2.2e-11 | 298 | 340 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd + + G++ W+ Ia+ ++ gRt++++k++w++ Lsa013919 298 GGFSEEEDNTICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 340 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.120.420 | 8.4E-5 | 1 | 35 | IPR027363 | Methylthioribose-1-phosphate isomerase-like, N-terminal domain |
Pfam | PF01008 | 2.6E-26 | 2 | 127 | IPR000649 | Initiation factor 2B-related |
SuperFamily | SSF100950 | 2.85E-39 | 2 | 127 | No hit | No description |
Gene3D | G3DSA:3.40.50.10470 | 1.5E-28 | 36 | 127 | No hit | No description |
PROSITE profile | PS50090 | 5.39 | 271 | 291 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-11 | 273 | 304 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-20 | 277 | 346 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.092 | 292 | 346 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-10 | 296 | 344 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.2E-10 | 298 | 340 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.71E-7 | 300 | 342 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-17 | 305 | 343 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044237 | Biological Process | cellular metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MLEDDVASNK AIGSYGSSFI QIQQKESKKF PVLTHCNTAS LATAEFGTAL GVIRALHDDR 60 VLGRAYCTET RPFNQGSRLT AYKLVHDKIP ATLIGDYAAA ALMKTRSIHA IIVGADRVTA 120 NGDTAKKXEF LIVLLHKKGV KEKLKKQIKE VELAQSKEVS LHWYGMAESV QVIGGIYVSF 180 SHLGEIRTFG MLHSRFKWVT SALCEXPCAN AKKRSLKDIM EIIAQDVMND GPSGEALFAF 240 DYQESAINVP RNLKYHLIYE NIKSPNXSVT WSHIGIKRCG KSCRLRWLNY LRPNIKHGGF 300 SEEEDNTICS LYISIGSRWS IIAAQLPGRT DNDIKNYWNT RLKKKLLGRR KQSHGNKLDG 360 STQDSKNGNE MESLSNSAIE RLQLHMQLQN LENPNHSPNL AMWPFKLNPI QEKMMHRLQL 420 LSESSNPLMM QYALPDAHQK DELFRPYNNM YSLPNNMLMN QMENSIDGIN VPESSSQVQE 480 SVVMKQPGME FQQYWALQAE IDEFLSNKGA NSIQVDQAQA NEFDYFKEMD GSKDMMTWWS 540 NEFDANSASS NSWDSNGVLD HQQQGYEQSA LKN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldq_A | 7e-38 | 1 | 127 | 132 | 259 | Methylthioribose-1-phosphate isomerase |
4ldq_B | 7e-38 | 1 | 127 | 132 | 259 | Methylthioribose-1-phosphate isomerase |
4ldr_A | 7e-38 | 1 | 127 | 132 | 259 | Methylthioribose-1-phosphate isomerase |
4ldr_B | 7e-38 | 1 | 127 | 132 | 259 | Methylthioribose-1-phosphate isomerase |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023731775.1 | 0.0 | transcription factor MYB36-like | ||||
TrEMBL | A0A2J6KK26 | 0.0 | A0A2J6KK26_LACSA; Uncharacterized protein | ||||
STRING | EMJ26027 | 4e-94 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-50 | myb domain protein 36 |