PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007005
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YC
Protein Properties Length: 311aa    MW: 34789.1 Da    PI: 8.0682
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-1407PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC35.32.5e-11206296999
      NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                +i+++      ++P+ r+ +i+k+++   +i+ ea  ++ ka e f+  +t  ++  a   +++ +    ++++v +   fdfl d vp++
  Lsa007005 206 EIDEKDSSSLYQIPMNRVSRIIKVEDPNVRITQEAVFIINKASEKFLQLFTTEAYASAFLDRKKHIGYKHLSSVVGKRRRFDFLSDFVPEK 296
                455555566789***********97777789*********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002324.0E-19268IPR001360Glycoside hydrolase family 1
SuperFamilySSF514456.77E-18269IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.805.7E-20269IPR013781Glycoside hydrolase, catalytic domain
PfamPF008081.7E-12217280IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.4E-19219295IPR009072Histone-fold
SuperFamilySSF471134.03E-15227296IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0004553Molecular Functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGAATAAYQI EGAACEGGRG PCIWDTYCHE RPASIVNGDN GNTAVNSYFK MKDDVQMLKK  60
TGLNAIDFQF HGVEYSQVNY KKMAKEQKAE SGRSKKGETA PATAKANGKR KIKKNAEGDV  120
QVEVPIVQSS SSNSHNHERN GVKSESFVEE QVEVSGKVDV VDDSVEAEEA MKSTEASKEE  180
KKKEKAKEEE VKEDTHQKKK KKVKEEIDEK DSSSLYQIPM NRVSRIIKVE DPNVRITQEA  240
VFIINKASEK FLQLFTTEAY ASAFLDRKKH IGYKHLSSVV GKRRRFDFLS DFVPEKVKAE  300
DALKETPAVE T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zj6_A6e-1819728116RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE
3zj6_B6e-1819728116RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE
4a3y_A6e-1819728116RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE
4a3y_B6e-1819728116RAUCAFFRICINE-O-BETA-D-GLUCOSIDASE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266284RKKHIGYKHLSSVVGKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733230.11e-160DNA polymerase epsilon subunit C
TrEMBLA0A2J6KGL51e-159A0A2J6KGL5_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.13e-27nuclear factor Y, subunit C10