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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1880150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NF-YC | ||||||||
Protein Properties | Length: 318aa MW: 35954.7 Da PI: 6.5088 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 141.7 | 1.8e-44 | 71 | 171 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l++fwe++ ie+ df nh++Plarikki+kad++v+ ++a+aPvl+sk ce+fi++lt+r+w++aeenkrrtl+ sdia+a++rt++fdfl Lj6g3v1880150.1 71 LNNFWETKckeIENPIDF-NHAFPLARIKKIMKADPNVNSVAADAPVLFSKVCEMFIMDLTMRAWMNAEENKRRTLQTSDIASAISRTEVFDFL 163 889**9986556666666.89************************************************************************* PP NF-YC 93 vdivprde 100 v ivp+de Lj6g3v1880150.1 164 VGIVPKDE 171 ******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.23E-29 | 26 | 163 | IPR009072 | Histone-fold |
Pfam | PF00808 | 8.0E-20 | 92 | 154 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.2E-33 | 92 | 169 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDENQPEPEQ LEGGEDTPAQ EANVMHQSQP NQMTTHTQIV GGSSSSCYRR GQLYLHQHIH 60 RLQQQQLRRR LNNFWETKCK EIENPIDFNH AFPLARIKKI MKADPNVNSV AADAPVLFSK 120 VCEMFIMDLT MRAWMNAEEN KRRTLQTSDI ASAISRTEVF DFLVGIVPKD EKMEHDVYAG 180 IPPRTGNDVE VVQNVPPPLG TTHPYYAEVV QNVPGVQNVP PPLGTPHPYY AEVVQNVPAV 240 QNVPPPLGTP HPYYYVPAPP PHHFGSAIPP RMVMARPPFD HPIYRQQPPY PYAPQALQYA 300 APKHLMIENS PDSDETKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-38 | 77 | 169 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1880150.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004960 | 0.0 | AP004960.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028761070.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028761071.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028761072.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028761073.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028761074.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028795188.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028795189.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028795190.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028795191.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_028795192.1 | 3e-49 | nuclear transcription factor Y subunit C-3-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 1e-43 | nuclear factor Y, subunit C2 |