PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj6g3v1880140.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

NF-YC

Protein Properties

Length: 318aa MW: 35954.7 Da PI: 6.5088

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj6g3v1880140.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	141.7	1.8e-44	71	171	2	100
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 l++fwe++ ie+ df nh++Plarikki+kad++v+ ++a+aPvl+sk ce+fi++lt+r+w++aeenkrrtl+ sdia+a++rt++fdfl Lj6g3v1880140.1 71 LNNFWETKckeIENPIDF-NHAFPLARIKKIMKADPNVNSVAADAPVLFSKVCEMFIMDLTMRAWMNAEENKRRTLQTSDIASAISRTEVFDFL 163 8899986556666666.89********************************************************************* PP NF-YC 93 vdivprde 100 v ivp+de Lj6g3v1880140.1 164 VGIVPKDE 171 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	8.23E-29	26	163	IPR009072	Histone-fold
Pfam	PF00808	8.0E-20	92	154	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.2E-33	92	169	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MDENQPEPEQ LEGGEDTPAQ EANVMHQSQP NQMTTHTQIV GGSSSSCYRR GQLYLHQHIH 60 RLQQQQLRRR LNNFWETKCK EIENPIDFNH AFPLARIKKI MKADPNVNSV AADAPVLFSK 120 VCEMFIMDLT MRAWMNAEEN KRRTLQTSDI ASAISRTEVF DFLVGIVPKD EKMEHDVYAG 180 IPPRTGNDVE VVQNVPPPLG TTHPYYAEVV QNVPGVQNVP PPLGTPHPYY AEVVQNVPAV 240 QNVPPPLGTP HPYYYVPAPP PHHFGSAIPP RMVMARPPFD HPIYRQQPPY PYAPQALQYA 300 APKHLMIENS PDSDETKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-38	77	169	2	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj6g3v1880140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP004960	0.0	AP004960.1 Lotus japonicus genomic DNA, chromosome 6, clone: LjT19B18, TM0139, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028761070.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028761071.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028761072.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028761073.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028761074.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028795188.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028795189.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028795190.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028795191.1	3e-49	nuclear transcription factor Y subunit C-3-like
Refseq	XP_028795192.1	3e-49	nuclear transcription factor Y subunit C-3-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1257	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	1e-43	nuclear factor Y, subunit C2