PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj6g3v1239580.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | bHLH | ||||||||
Protein Properties | Length: 398aa MW: 44718.4 Da PI: 9.5181 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.9 | 2.7e-11 | 215 | 259 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N+ f+ Lr llP+ +K +Ka+iL A e ++sL Lj6g3v1239580.1 215 HMISERRRREKLNENFQALRALLPPG-----TKKDKASILITAKETLSSL 259 8899********************97.....8***********9998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.03E-13 | 208 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.46E-10 | 208 | 263 | No hit | No description |
PROSITE profile | PS50888 | 13.732 | 210 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-13 | 214 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-8 | 215 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.8E-9 | 216 | 265 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGCNKGEIEL GFLNMSQADL QTALRSLFPE DFSRQTQQID HNNPPTSSSS SLRSPSTGSP 60 EYSSLLFNNI PGTSSQPHFP ETLRGALPPI NPSTSPHHHH HQQQAIQLQA LAQTTPIQFP 120 TTPNIEHDAI MRAILNVISP VPSQQQNLPY MVHPEATAFM RYSNRPDHIT SSQMGSNLRR 180 QSLMKRSFAF FRSLNFVRMR ERNQATRPSS TQLHHMISER RRREKLNENF QALRALLPPG 240 TKKDKASILI TAKETLSSLL AEIDKQAKKN QELTSLFPAK ESTTEGTKAT LSSSSNERFS 300 VQVSNVLESS SSEERTVDLQ VNLRGQISQA DVLIRLLEFL KQVHHVSLIS MSTNAEGNAI 360 HQLTFRLRII QGSEWDELAF QEAVRRVVAD LAQCQVDQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 218 | 223 | ERRRRE |
2 | 219 | 224 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj6g3v1239580.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027339338.1 | 0.0 | putative transcription factor bHLH041 | ||||
TrEMBL | A0A371G9N6 | 1e-179 | A0A371G9N6_MUCPR; Putative transcription factor bHLH041 (Fragment) | ||||
STRING | GLYMA15G18580.2 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4150 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56960.1 | 2e-53 | bHLH family protein |