PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj6g3v1239580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 398aa    MW: 44718.4 Da    PI: 9.5181
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj6g3v1239580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.92.7e-11215259554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h + ErrRR+++N+ f+ Lr llP+      +K +Ka+iL  A e ++sL
  Lj6g3v1239580.1 215 HMISERRRREKLNENFQALRALLPPG-----TKKDKASILITAKETLSSL 259
                      8899********************97.....8***********9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.03E-13208273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.46E-10208263No hitNo description
PROSITE profilePS5088813.732210259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-13214274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-8215259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-9216265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGCNKGEIEL GFLNMSQADL QTALRSLFPE DFSRQTQQID HNNPPTSSSS SLRSPSTGSP  60
EYSSLLFNNI PGTSSQPHFP ETLRGALPPI NPSTSPHHHH HQQQAIQLQA LAQTTPIQFP  120
TTPNIEHDAI MRAILNVISP VPSQQQNLPY MVHPEATAFM RYSNRPDHIT SSQMGSNLRR  180
QSLMKRSFAF FRSLNFVRMR ERNQATRPSS TQLHHMISER RRREKLNENF QALRALLPPG  240
TKKDKASILI TAKETLSSLL AEIDKQAKKN QELTSLFPAK ESTTEGTKAT LSSSSNERFS  300
VQVSNVLESS SSEERTVDLQ VNLRGQISQA DVLIRLLEFL KQVHHVSLIS MSTNAEGNAI  360
HQLTFRLRII QGSEWDELAF QEAVRRVVAD LAQCQVDQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218223ERRRRE
2219224RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj6g3v1239580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339338.10.0putative transcription factor bHLH041
TrEMBLA0A371G9N61e-179A0A371G9N6_MUCPR; Putative transcription factor bHLH041 (Fragment)
STRINGGLYMA15G18580.21e-172(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-53bHLH family protein