PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj5g3v1548910.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 1003aa    MW: 111462 Da    PI: 5.9401
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj5g3v1548910.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP125.91.6e-39148225178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++
  Lj5g3v1548910.1 148 VCQVEDCCADLSRAKDYHRRHKVCEMHSKATRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNN 225
                      6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-32141210IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.812146223IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-36147227IPR004333Transcription factor, SBP-box
PfamPF031108.4E-28149222IPR004333Transcription factor, SBP-box
SuperFamilySSF484031.2E-7776892IPR020683Ankyrin repeat-containing domain
CDDcd002041.47E-6780891No hitNo description
Gene3DG3DSA:1.25.40.203.7E-7780894IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    Send to blast
MEARFGAEAY HYYGVGASSD MRGMGKRSAE WDLNNWRWDG DLFIASRVNP VQEDGVGQQL  60
FPLVSGIPAS NSSSSCSEEV DLRDPMGSRE GERKRRVIVL EDDGLNEEGG TLSLKLGGHA  120
ADREVASWDG GNGKKSRVAG GGASNRAVCQ VEDCCADLSR AKDYHRRHKV CEMHSKATRA  180
LVGNAMQRFC QQCSRFHMLQ EFDEGKRSCR RRLAGHNKRR RKTNNEAVPN GNPLNDDQTS  240
SYLLISLLKI LSNMNSDRSD QTTDQDLLTH LLRSLASRNG EQGGNNLSNI LREPENLLRE  300
GGSSRESEMV PTLLSNGSQG SPTDIRQHQT VSMNKMQQEV VHAHDARATD QQLMSYIKPS  360
ISNTPPAYAE ARDSTAGQIK MNNFDLNDIY IDSDDGIEDL ERLPGTTNHV TSSLDYPWTQ  420
QDSHQSSPPQ TSRNSESGSA HSPSSSTGEA QCRTDRIVIK LFGKEPSDFP LILRAQILDW  480
LSHSPTDIES YIRPGCIVLT IYLRQAEAVW EEICYDLTSS LGRLLDVSDD TFWRTGWVHI  540
RVQHQMAFIF NGQVVIDTSL PFRSNNYSKI LTVSPIAAPA SKRVQFSVKG VNMIRPATRL  600
MCALEGKYLV CEDAHESMDQ YSEELDGLHC IQFSCAVPVT NGRGFIEIED QGLSSSFFPF  660
IVAEEDVCSD ICGLEPLLEL SETDPDIEGT GKIKAKSQAM DFIHEIGWLL HGSQLKSRMV  720
HLSSSTDLFP LKRFKWLMEF SMDHDWCAVV KKLLNLLLEG TVSTGDHPSL DLALSEMGLL  780
HRAVRRNSKQ LVELLLTYVP ENISNEVRPE GKALVEGEKQ SFLFRPDAAG PAGLTPLHIA  840
AGKDGSEDVL DALTNDPCMV GIEAWKNARD STGSTPEDYA RLRGHYTYIH LVQKKINKRQ  900
GAPHVVVEIP TNLTENDTNQ KQNESSTTFE IAKTRDQGHC KLCDIKLSCR TAVGRSLVYK  960
PAMLSMVAVA AVCVCVALLF KSSPEVLYMF RPFSWESLDF GTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30142222484squamosa promoter binding protein-like 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.252620.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00633PBMTransfer from PK06791.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj5g3v1548910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352074.10.0squamosa promoter-binding-like protein 1
RefseqXP_028184385.10.0squamosa promoter-binding-like protein 1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A0S3SQY10.0A0A0S3SQY1_PHAAN; Uncharacterized protein
STRINGGLYMA02G01160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]