PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v3113240.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ARR-B
Protein Properties Length: 433aa    MW: 48978 Da    PI: 5.1551
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v3113240.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.81e-07196217122
          G2-like   1 kprlrWtpeLHerFveaveqLG 22 
                      k r++Wt eLHe+F++av+qLG
  Lj4g3v3113240.1 196 KRRIVWTAELHENFMRAVTQLG 217
                      689******************7 PP
2Response_reg653.5e-22181281109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE..STTTHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt..ahgeeedaleal 90 
                      +l vd++ +v++l+++++++ +y +v+ +++++ al ll+e++  +Dlil  i+mp+mdG+e+l++ ++e  ++p+i+++   +++++ + +a+
  Lj4g3v3113240.1  18 ILAVDEDINVLNLIEEMCTQCHY-HVTPCSEARVALSLLRERNvpFDLILSGIRMPDMDGFEFLQQVTNEI-DVPVIMMSmpEESTKSVVMRAI 109
                      789********************.*******************99**********************9988.9*******6555669******* PP

                      HTTESEEEESS--HHHHHH CS
     Response_reg  91 kaGakdflsKpfdpeelvk 109
                        Ga+df+ Kp  +e+ ++
  Lj4g3v3113240.1 110 TNGASDFFIKPLREEQFRT 128
                      ************9999775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521726.69E-2715145IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.2E-3015154No hitNo description
SMARTSM004481.6E-2016130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011031.74517134IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.2E-1818128IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.53E-2019134No hitNo description
Gene3DG3DSA:1.10.10.602.3E-7194218IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEMEAYANGN QFPAGLRILA VDEDINVLNL IEEMCTQCHY HVTPCSEARV ALSLLRERNV  60
PFDLILSGIR MPDMDGFEFL QQVTNEIDVP VIMMSMPEES TKSVVMRAIT NGASDFFIKP  120
LREEQFRTIW QHVMRKAFKE ENITSLEEYD RKRRGSDSSV TDEGVDADTA TKENASTKEA  180
VVYESEINGY TPTQKKRRIV WTAELHENFM RAVTQLGLHI IEIIINNVEI LIWQKFRNFL  240
KRSNAEAHQQ NGMSNKFKHG GYNGFEALVA SGHISLEMLS NFQSEVMGFP NNDNVQMNNT  300
LQHQQIQQQT LMQIHSNNGF QSSHTQIIGY NNNVILPQSS NFSGIAQFPV DNNRGRNIYL  360
PTQHLQNTSL KRSSSVPIIT QGVPYGSSTS SHDSQVVSYV APVENSCTDM NTLNQDPNYS  420
MPLEDLPPSS GYP
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj4g3v3113240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049110.0AP004911.2 Lotus japonicus genomic DNA, chromosome 4, clone: LjT13O11, TM0069, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-52response regulator 2