PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj3g3v3556020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35799.7 Da PI: 6.6364 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.7 | 4.1e-48 | 16 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPt+eel+++yLk+ v+gkkl++ +vi ++iy+++PwdLp k +e+ewyfF++rdkk+ +g r+nr+t++g+Wkatg+d+++++ Lj3g3v3556020.1 16 LPGFRFHPTEEELLDFYLKNMVAGKKLRF-DVIGFLNIYHHDPWDLPGLSKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTL 108 59*************************99.99***************8778899*************************************987 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +gl+ktLvfy+grap+g+ktdWvm+eyrl Lj3g3v3556020.1 109 sdPKRIIGLRKTLVFYQGRAPRGSKTDWVMNEYRL 143 666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-56 | 13 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.453 | 15 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-26 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045792 | Biological Process | negative regulation of cell size | ||||
GO:0048281 | Biological Process | inflorescence morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 314 aa Download sequence Send to blast |
MASMEDMNNI TEETALPGFR FHPTEEELLD FYLKNMVAGK KLRFDVIGFL NIYHHDPWDL 60 PGLSKVGERE WYFFVPRDKK HGSGGRPNRT TEKGFWKATG SDRKIVTLSD PKRIIGLRKT 120 LVFYQGRAPR GSKTDWVMNE YRLPDNCRLP KDIVLCKIYR KATSLKVLEQ RAALEEEMKQ 180 FGSSPASPPS STDTMSFTHE DQNIMSLPLF QDVVLKKESE AEAENEEMML SMSMSVPKQE 240 KSQTQLVFND SNKSTCGGGG SSLQLPLGND KLPELQLPMV TDWTTQLTQD TFWAHLNSPW 300 LQNLTPSSIL NFHS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-46 | 17 | 161 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Lja.2247 | 0.0 | pod| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj3g3v3556020.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT098651 | 1e-177 | BT098651.1 Soybean clone JCVI-FLGm-23E20 unknown mRNA. | |||
GenBank | DQ028774 | 1e-177 | DQ028774.1 Glycine max NAC domain protein NAC6 (NAC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236900.2 | 1e-175 | NAC domain protein NAC6 | ||||
Refseq | XP_028195212.1 | 1e-175 | NAC domain-containing protein 22-like | ||||
Swissprot | Q10S65 | 1e-96 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A445HJG3 | 1e-173 | A0A445HJG3_GLYSO; NAC domain-containing protein 22 | ||||
TrEMBL | I1LPE9 | 1e-173 | I1LPE9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G02540.1 | 1e-174 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6214 | 32 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-110 | NAC domain containing protein 36 |
Publications ? help Back to Top | |||
---|---|---|---|
|