PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1988760.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SRS
Protein Properties Length: 357aa    MW: 40295 Da    PI: 5.0329
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1988760.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF70223.12e-072967543
           DUF702  5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstW 43
                     + +C++CGn a+  C +e+C+ CC  ++  C+ hvk   
  Lj2g3v1988760.1 29 KPKCKQCGNVARSRCPYEQCKRCCSRNENPCHIHVKTNS 67
                     569********************************9653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051429.5E-63196IPR007818Protein of unknown function DUF702
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAPNNTKDL TQATAMALNP PKSQRGLNKP KCKQCGNVAR SRCPYEQCKR CCSRNENPCH  60
IHVKTNSTLP DKLPSSFGAP LDQQSLETSQ SATASRVASL RQLSNNFAQF NNLNISLRSK  120
KPLTIKDAAT INEWRLSKLK EYKERNIDVE NETFDRYMQN VELLEEVLSV KSVENNMTSA  180
SESPTTSMEN NNEMMTTGLK LHLRSNSFRS DSLRMRIQQF VDKGLHRLEK FAVDDDINKP  240
IDEEPSEVSK RPKSCSDERL SAISDLIDKI NKARSEEDLN SCLEMKSQLF NLEVDSGSIE  300
ILDHETPENE IAKSESTSAE ELDYSSPKLV VTAEVDQDTL NTVDRYLSSL EQHVEEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.67350.0floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj2g3v1988760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027336314.11e-165uncharacterized protein LOC113850132 isoform X1
TrEMBLA0A1S3UMT51e-161A0A1S3UMT5_VIGRR; uncharacterized protein LOC106766975 isoform X1
STRINGXP_007155734.11e-160(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76901618
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32730.12e-90