PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4288730.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 341aa    MW: 38600.8 Da    PI: 6.7455
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4288730.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05264286123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +Cgk F  + + ++H +++
  Lj1g3v4288730.1 264 FMCRKCGKAFAVRGDWRTHEKNC 286
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58180202IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-6180199IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64180207IPR007087Zinc finger, C2H2
PROSITE patternPS000280182202IPR007087Zinc finger, C2H2
SuperFamilySSF576671.59E-6246284No hitNo description
Gene3DG3DSA:3.30.160.609.0E-6251284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549264284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808264284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MADPYSNFFS SPGFFHFNPI HHHHHHFPSP NPSPHHPHVH NFFHHHHQIT TANASSSSSS  60
PPSPPLRVEL PLLGLSPAKQ EEYNEEQEQQ EDHLSKEEEL EEEDQEDGTV TVALHIGLPS  120
PSAAEIASVM SSNSSEISDN HKDHVMDGED DSGLMSTNRL NKGQYWIPTP SQILIGPTQF  180
SCPVCCKTFN RYNNMQMHMW GHGSQYRKGP ESLRGSQPTG MLRLPCYCCS PGCRNNIDHP  240
RAKPLKDFRT LQTHYKRKHG IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH  300
KRSLKDHIKA FGSGHAAYGI DGFEEEDEPA SEVEQDNDST Q
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.84005e-61flower| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4288730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0988930.0BT098893.1 Soybean clone JCVI-FLGm-23O4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003521192.10.0zinc finger protein WIP2
RefseqXP_028225335.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-144ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A0R0KIS40.0A0A0R0KIS4_SOYBN; Uncharacterized protein
TrEMBLA0A445LBY50.0A0A445LBY5_GLYSO; Zinc finger protein WIP2
STRINGGLYMA03G29610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-141C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]