PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2377980.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 526aa    MW: 58663.5 Da    PI: 6.9613
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2377980.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.95.3e-1874131155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Lj1g3v2377980.1  74 CKFRGVRQRI-WGKWVAEIREPIN-GkhageKANRLWLGTFSTAHEAALAYDEAAKAMYG 131
                      79*****998.**********855.33666777************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.31E-3274141No hitNo description
PfamPF008472.2E-1374131IPR001471AP2/ERF domain
PROSITE profilePS5103221.64175139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-2875141IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-1875140IPR016177DNA-binding domain
SMARTSM003808.3E-3675145IPR001471AP2/ERF domain
PRINTSPR003679.9E-97687IPR001471AP2/ERF domain
PRINTSPR003679.9E-9105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKTDIISGDR RSRKRRVGGR VDSVEDTLEK WKKYNKQQEL GVGEDGVEKI HKVPAKGSRK  60
GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKHA GEKANRLWLG TFSTAHEAAL  120
AYDEAAKAMY GPCARLNFPE SRPNGSSSPS GSSDTLSGGG DLAKAVELEG NLHQSSGEKL  180
RFSAVGVFDE SAERMVPSEA CVFDDSVEDS KEVTNDDFQC RTNENCKSIT QQGSLKNAKY  240
EISRDNDGKK KESEVNLNNY VWKNLQEGPV VVAMNSRAGY RSCDATEHEI LVKSEGTKGE  300
SVEPLNSLEL SCNYHHLHNM LPERDLRPNS EHFNSIQCEP IAKKHWKEVI SEILELCCSS  360
NNSKISHVQS QNEPCKNESF DEMKTGLKGL ECKMRVHSIG FKNEAPIMED SNHSIQRIPL  420
FGGGGATVGL NERMSQAEDL STKTHRISRL QEKGNYGNAL PGFSSGQGRK LCDFSQHLQK  480
LGEHWNNKQF ADMEVSYDYS FLSPDYDFGL LEEKKLLDVC FSHLGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1676139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2377980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350114.10.0uncharacterized protein LOC113861479
TrEMBLV7B6W70.0V7B6W7_PHAVU; Uncharacterized protein
STRINGXP_007140202.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.18e-34ERF family protein