PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0886560.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MIKC_MADS
Protein Properties Length: 142aa    MW: 16123.5 Da    PI: 9.8367
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0886560.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.94.1e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien+snrqvt+skR+ngilKKA+E+SvLCda+v++iif+s+gk++ey+s
  Lj1g3v0886560.1  9 KRIENSSNRQVTYSKRKNGILKKAKEISVLCDAQVSLIIFGSSGKMHEYIS 59
                     79***********************************************86 PP
2K-box812.9e-2771140170
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKn 70 
                      yq++sgk l++ak+e+l++e++++kke++++q e+Rhl+G+d++sL++keL+ Le++Le++lk iR+kK 
  Lj1g3v0886560.1  71 YQRASGKTLWDAKHENLSNEIDRVKKENDSMQIELRHLKGDDITSLNYKELMALEEALENGLKGIREKKA 140
                      78999***************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.198161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.97E-37296IPR002100Transcription factor, MADS-box
CDDcd002652.07E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-29323IPR002100Transcription factor, MADS-box
PfamPF003196.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004045.5E-293859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-1782140IPR002487Transcription factor, K-box
PROSITE profilePS5129712.10984142IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRKNGILK KAKEISVLCD AQVSLIIFGS SGKMHEYISP  60
STTLIDVLDR YQRASGKTLW DAKHENLSNE IDRVKKENDS MQIELRHLKG DDITSLNYKE  120
LMALEEALEN GLKGIREKKA SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A3e-20191183MEF2 CHIMERA
6bz1_B3e-20191183MEF2 CHIMERA
6bz1_C3e-20191183MEF2 CHIMERA
6bz1_D3e-20191183MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0886560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1456600.0BT145660.1 Lotus japonicus clone JCVI-FLLj-7M21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007137476.12e-93hypothetical protein PHAVU_009G130000g
SwissprotQ0HA257e-81MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLI3SYW23e-95I3SYW2_LOTJA; Uncharacterized protein
STRINGXP_007137476.17e-93(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-70MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]