PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v0765580.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 474aa    MW: 52809.2 Da    PI: 6.7936
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v0765580.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.45.6e-53501771128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv +yLk+kv gk++++ ++i+evdiyk+ePwdL   +++k++++ewyfFs  dkky +g r nrat++gyWkatg+d++v
  Lj1g3v0765580.1  50 LAPGFRFHPTDEELVIYYLKRKVCGKNFRF-DAISEVDIYKSEPWDLAdkSRLKTRDQEWYFFSALDKKYGNGGRMNRATSQGYWKATGNDRPV 142
                      579**************************9.99**************75348899999************************************ PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + ++++vglkktLvf++grap+g++t+Wvmheyr+
  Lj1g3v0765580.1 143 RH-GQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRI 177
                      **.999****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.32E-6141205IPR003441NAC domain
PROSITE profilePS5100558.14450204IPR003441NAC domain
PfamPF023653.9E-2752177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGRETQLILA PPTTTTTTTV EPQPPPPPPP LAAPSASASA AAVAAPPTSL APGFRFHPTD  60
EELVIYYLKR KVCGKNFRFD AISEVDIYKS EPWDLADKSR LKTRDQEWYF FSALDKKYGN  120
GGRMNRATSQ GYWKATGNDR PVRHGQRTVG LKKTLVFHSG RAPDGKRTNW VMHEYRIVEE  180
ELERGGTGSS QTQDAYVLCR VFHKNNIGPP NGQRYAPFIE EEWDDDASGL VPGVEPVGDG  240
SVARHARVEG NGVSCSEGRN DVVQDTQSIN KAPFDVTNLP IETQNLIAVC KRAKMDEFPS  300
PEKDDSKQMQ MDEYPSSQTD NPKPFSQIYK RRRYNLNSNH SQASEDSAKT NQGPCSSTIT  360
TAATTLPTTT TTEAATNPAP KKHFLSALVE YSLLESLESK ESPVSIKPED LDAAHPTCTK  420
FLKQMQSEMQ KLSVEKETMR FELMSTQTMI KILQSRNDVL TKENEELKRM MGNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-494920619170NAC domain-containing protein 19
3swm_B4e-494920619170NAC domain-containing protein 19
3swm_C4e-494920619170NAC domain-containing protein 19
3swm_D4e-494920619170NAC domain-containing protein 19
3swp_A4e-494920619170NAC domain-containing protein 19
3swp_B4e-494920619170NAC domain-containing protein 19
3swp_C4e-494920619170NAC domain-containing protein 19
3swp_D4e-494920619170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.130350.0cell culture| protoplast| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in floral organs, and, at low levels, in other organs. {ECO:0000269|PubMed:25578968}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00612ChIP-seqTransfer from AT3G10490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v0765580.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105230.0AP010523.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT23O16, TM1810, complete sequence.
GenBankAP0105240.0AP010524.1 Lotus japonicus genomic DNA, chromosome 5, clone: LjT34P16, TM1824, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514246.10.0NAC domain-containing protein 7
SwissprotQ9SQY01e-127NAC52_ARATH; NAC domain containing protein 52
TrEMBLA0A1S3V7C40.0A0A1S3V7C4_VIGRR; NAC domain-containing protein 7
STRINGXP_004496131.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81893241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.21e-111NAC domain containing protein 52
Publications ? help Back to Top
  1. Higgins JD,Ferdous M,Osman K,Franklin FC
    The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
    Plant J., 2011. 65(3): p. 492-502
    [PMID:21265901]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang S, et al.
    C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
    Cell Discov, 2019.
    [PMID:26617990]
  4. Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
    sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
    Plant J., 2017. 90(3): p. 505-519
    [PMID:28207953]
  5. Elmayan T, et al.
    Arabidopsis mutants impaired in cosuppression.
    Plant Cell, 1998. 10(10): p. 1747-58
    [PMID:9761800]