PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj0g3v0324749.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 353aa MW: 40083.9 Da PI: 6.8173

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj0g3v0324749.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	192	211	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r nL+ H+ Lj0g3v0324749.1 192 FACSVCSKTFNRYNNLQMHM 211 78*****************9 PP
2	zf-C2H2	15.4	5.3e-05	276	298	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C +Cgk F k + ++H +++ Lj0g3v0324749.1 276 YMCRKCGKAFAVKGDWRTHEKNC 298 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.12E-5	186	214	No hit	No description
Pfam	PF13912	4.4E-5	192	211	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.845	192	219	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.12	192	214	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.2E-5	192	211	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	194	214	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.02E-6	260	296	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.5E-6	272	296	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	40	276	296	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.974	276	296	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MPLPHQTFTM SDPQPNSYDE WFNFMLHHPH YSSSSSSSYS PPSQSNIWSP YPPIYSNNMF 60 EIPLSSASSS SARPLSPPLR EALPLINKLS LTNQQNNELS NINIGIEVEE DKHEDDDEDE 120 EDVTVNFSLR IGLPRMSTSS DLGSTSRMSS TSLEMAQREE VNMISEQSLE RLNKGQYWIP 180 TPSQILIGPT QFACSVCSKT FNRYNNLQMH MWGHGSQYRK GPDSLKGTQP TAMLRLPCFC 240 CAPGCKHNID HPRARPLKDF RTLQTHYKRK HGIKPYMCRK CGKAFAVKGD WRTHEKNCGK 300 IWYCLCGSDF KHKRSLKDHI KAFGYGHGAL GVDCLQEEDE AASENEHDEE SSL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MPLPHQTFTM SDPQPNSYDE WFNFMLHHPH YSSSSSSSYS PPSQSNIWSP YPPIYSNNMF  60
EIPLSSASSS SARPLSPPLR EALPLINKLS LTNQQNNELS NINIGIEVEE DKHEDDDEDE  120
EDVTVNFSLR IGLPRMSTSS DLGSTSRMSS TSLEMAQREE VNMISEQSLE RLNKGQYWIP  180
TPSQILIGPT QFACSVCSKT FNRYNNLQMH MWGHGSQYRK GPDSLKGTQP TAMLRLPCFC  240
CAPGCKHNID HPRARPLKDF RTLQTHYKRK HGIKPYMCRK CGKAFAVKGD WRTHEKNCGK  300
IWYCLCGSDF KHKRSLKDHI KAFGYGHGAL GVDCLQEEDE AASENEHDEE SSL

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269\|PubMed:17600712}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj0g3v0324749.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-170	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027338717.1	0.0	zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-118	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A371HIC6	1e-180	A0A371HIC6_MUCPR; Zinc finger protein WIP2 (Fragment)
STRING	GLYMA12G36660.2	1e-178	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-120	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]