PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0284449.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 362aa    MW: 40346.7 Da    PI: 4.5137
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0284449.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.7e-19111160255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp +   r r +lg++ taeeAa  +++a+ +l+g
  Lj0g3v0284449.1 111 KFRGVRQRP-WGKWAAEIRDPAK---RVRLWLGTYNTAEEAAMVYDNAAIRLRG 160
                      89*******.**********843...6*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-29110168IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-21111168IPR016177DNA-binding domain
CDDcd000187.37E-33111167No hitNo description
PROSITE profilePS5103223.341111168IPR001471AP2/ERF domain
SMARTSM003804.4E-38111174IPR001471AP2/ERF domain
PfamPF008472.9E-12111160IPR001471AP2/ERF domain
PRINTSPR003678.4E-10112123IPR001471AP2/ERF domain
PRINTSPR003678.4E-10134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MMEMEMEQSF LCKYTEHHSI TKKLVKGKTM EPRVVSISVT DPDATDSSSD EEGGGSRGER  60
FFRRRTKRYV NRIEIETTAT VSNPRKRPAV KTPSSHRRPA KVPAVNGDGR KFRGVRQRPW  120
GKWAAEIRDP AKRVRLWLGT YNTAEEAAMV YDNAAIRLRG PDALTNFVTP PQKENEDAPP  180
LPVAVKPEMK VTVDAEASSS YDSGDDHRCR NLSSPTSVLH FRTNSTESQK PVEPEDTTTE  240
PESASFSGSG VLFSEYQSQS QGETTSLFDE TTMGVTIPSW DDFFNYQATD YPLLFEEEPA  300
QIFSDTTPFG GLDEDFCSDS IFLADSLIDF DIACPPPPSN SCQADDDFFQ DICFGSDPLV  360
AL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-21109167362ATERF1
3gcc_A1e-21109167362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0284449.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027339283.11e-128ethylene-responsive transcription factor CRF3-like
TrEMBLG7J6931e-120G7J693_MEDTR; Ethylene response factor
STRINGAES724371e-121(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.29e-48cytokinin response factor 2