PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj0g3v0153129.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 345aa    MW: 38596.4 Da    PI: 5.2374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj0g3v0153129.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20118168155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr+++ +g+W+AeIrdp++   r r++lg+f taeeAa +++ a+ +l+g
  Lj0g3v0153129.1 118 KKFRGVRQRP-WGKWAAEIRDPNS---RVRVWLGTFNTAEEAAMQYDTAAIRLRG 168
                      59********.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.00E-31118175No hitNo description
PfamPF008471.3E-13119168IPR001471AP2/ERF domain
PROSITE profilePS5103223.301119176IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-21119176IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.1E-30119176IPR001471AP2/ERF domain
SMARTSM003801.5E-36119182IPR001471AP2/ERF domain
PRINTSPR003673.1E-10120131IPR001471AP2/ERF domain
PRINTSPR003673.1E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEQQQQQNNM LCKYTEHRNV TKKIITKPKK QSFNGFVPTE PRVVRVSVTD ADATDSSSDE  60
EGQSRCSRRQ RVKRYINMIE IEPSCKTVTA ATKKRKRVAG ETVPCRRPVK VLPANGGKKF  120
RGVRQRPWGK WAAEIRDPNS RVRVWLGTFN TAEEAAMQYD TAAIRLRGPD ALTNFVTPPA  180
RVEAEAEEAA AAVRAEKTGL NVVVVKQDDA SGSGSGSDSG DESRHVSSPT SVLRFRREAE  240
TFEPEKPVEP EEMRADAEPT ELVEPGECGL FNDMPAWDEV FRFPSTPEYA VMFDEPAPHL  300
VDETTPFFLT EGFNVDKTHS PSMSLCQVED FFQDILLSSD PLVLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-21117184368ATERF1
3gcc_A4e-21117184368ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.54340.0floral bud| flower| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj0g3v0153129.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028806821.11e-106ethylene-responsive transcription factor CRF4-like isoform X1
TrEMBLA0A445L4K44e-94A0A445L4K4_GLYSO; Ethylene-responsive transcription factor CRF4
TrEMBLI1JYV54e-94I1JYV5_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA04G41740.17e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-36cytokinin response factor 4