PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj0g3v0057319.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10599.1 Da PI: 10.817 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.7 | 2e-11 | 46 | 81 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++eE +++++a +++G++ Wk++a+ + +R+ +++ Lj0g3v0057319.1 46 QWSKEELQRFYEAYRKYGKE-WKKVASAVR-NRSIEMV 81 7*******************.*********.***9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.73E-12 | 41 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 11.138 | 42 | 90 | IPR017884 | SANT domain |
SMART | SM00717 | 0.0069 | 43 | 89 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.1E-7 | 45 | 82 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.8E-10 | 46 | 82 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.87E-5 | 47 | 81 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MAPTKKSRSV NKRLSNSNDL SPEKDGVNSN KYKLRKKKLS DKLGSQWSKE ELQRFYEAYR 60 KYGKEWKKVA SAVRNRSIEM VEALYNLNRV |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed ubiquitously in vegetative and reproductive tissues. {ECO:0000269|PubMed:15246533}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj0g3v0057319.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020231534.1 | 1e-44 | protein ALWAYS EARLY 2 | ||||
Swissprot | Q6A331 | 9e-29 | ALY1_ARATH; Protein ALWAYS EARLY 1 | ||||
TrEMBL | A0A371HLU9 | 2e-43 | A0A371HLU9_MUCPR; Protein ALWAYS EARLY 3 (Fragment) | ||||
STRING | AES61372 | 2e-43 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21064 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21430.2 | 2e-21 | DNA binding |
Publications ? help Back to Top | |||
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