PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15160.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 307aa    MW: 34024.7 Da    PI: 5.284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15160.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.2e-15142191255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g +G++++   grW+AeIrd       +  r+++g+f+ta+ Aa+a++aa++k++g
  LPERR12G15160.1 142 GLRGIHRRA-YGRWAAEIRDvI-----KgVRVWIGTFDTADAAARAYDAAARKIHG 191
                      679**9887.8*********43.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.45E-19142201IPR016177DNA-binding domain
PROSITE profilePS5103221.272142199IPR001471AP2/ERF domain
PRINTSPR003671.2E-6143154IPR001471AP2/ERF domain
PfamPF008476.7E-9143191IPR001471AP2/ERF domain
SMARTSM003802.8E-26144205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-24144200IPR001471AP2/ERF domain
CDDcd000184.19E-13144199No hitNo description
PRINTSPR003671.2E-6165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MCGRRPDNQH HAGVLQPPPP PLSVLEMACQ LGEEDEDEEE EDDDDDGQEF EEEFRRFNMM  60
EDEKDDDDDD EIIAAVSPLR WPSLAVVRAR GVLSSSSSAV GPLVTNLVAP PPPEIRKAAK  120
RVTGGRGANN KRPSPPPASK HGLRGIHRRA YGRWAAEIRD VIKGVRVWIG TFDTADAAAR  180
AYDAAARKIH GRNAKTNFPF SRRSNDHPPP PPTTKTNSKR RPKKQRIIVN TDRRRPPPPP  240
PPQAVVDYND GAGDYHPAAA QAMEVSDGWE FEPFMQEFLL SGSIPPLDDQ YYAGDQDHGA  300
GGLWSFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13124199472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9Y1720.0A0A0D9Y172_9ORYZ; Uncharacterized protein
STRINGLPERR12G15160.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.12e-14ERF family protein