PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 167aa    MW: 18465.3 Da    PI: 11.7168
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-1767116255
              AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      g++GV+++   grW+AeIrd       +  r+++g+++ta++Aa+a++aa++k++g
  LPERR12G15140.1  67 GFRGVHRRA-YGRWAAEIRDvI-----KgDRVWIGTYDTADDAARAYDAAARKIHG 116
                      89****887.8*********43.....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-2067126IPR016177DNA-binding domain
PROSITE profilePS5103221.29867124IPR001471AP2/ERF domain
PfamPF008479.8E-1167116IPR001471AP2/ERF domain
SMARTSM003804.3E-2867130IPR001471AP2/ERF domain
PRINTSPR003671.3E-76879IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-2668124IPR001471AP2/ERF domain
PRINTSPR003671.3E-790106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MDFIMYLHYN YVLPVFTNSR IPSSAVEPAV TNQAPPPPKI TGGMSSIKAA KHRAGGGPPA  60
AAASKHGFRG VHRRAYGRWA AEIRDVIKGD RVWIGTYDTA DDAARAYDAA ARKIHGRHAK  120
TNFPFSDHPP PPPPTKTTKK RQPKKRNINV TTAAAVLLLL RRRRRKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1561124772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143165KKRNINVTTAAAVLLLLRRRRRK
2159166LRRRRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G15140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664719.27e-31PREDICTED: ethylene-responsive transcription factor RAP2-2-like
TrEMBLA0A0D9Y1701e-117A0A0D9Y170_9ORYZ; Uncharacterized protein
STRINGLPERR12G15140.11e-118(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-11ERF family protein