PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03800.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 329aa    MW: 34085 Da    PI: 5.0946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03800.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20158207255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     + +r++lg+f+tae Aa+a++aa+++++g
  LPERR12G03800.1 158 RYRGVRQRP-WGKWAAEIRDPQ----KaARVWLGTFDTAEAAAAAYDAAALRFRG 207
                      8********.**********93....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.63E-20157217No hitNo description
SuperFamilySSF541712.22E-22158216IPR016177DNA-binding domain
SMARTSM003801.1E-35158221IPR001471AP2/ERF domain
PfamPF008478.3E-14158207IPR001471AP2/ERF domain
PROSITE profilePS5103225.607158215IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-32158216IPR001471AP2/ERF domain
PRINTSPR003672.1E-11159170IPR001471AP2/ERF domain
PRINTSPR003672.1E-11181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCCGADVADP GEHQRQRRRP PLDAAGADDE GAAAATFAPM MMMMWRRRQA EEMTAMVSAL  60
ARVVAGGGGG AVPSLPAKRP AEREEPTAVE EAWWCGELAA GAMPFSPTPT PAAAPFPAAA  120
STSAAAAAAA AAAEEEEEIP SPSSADSGGG GGGATRKRYR GVRQRPWGKW AAEIRDPQKA  180
ARVWLGTFDT AEAAAAAYDA AALRFRGSRA KLNFPEHATL PTTPPTPASQ RRLPPPTPRP  240
DALLESAAGA GGVGGGDPYS MYARLLQIQS ACDGEAAAER TTTPPSSSTL LYSFGGGGGG  300
GMTWPASSPA VTWEEYGFFR PPERRDTDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-23157215463ATERF1
3gcc_A4e-23157215463ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619856.11e-103ethylene-responsive transcription factor ERF110
TrEMBLA0A0D9XX960.0A0A0D9XX96_9ORYZ; Uncharacterized protein
STRINGLPERR12G03800.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.13e-24related to AP2 6