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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G09240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 262aa MW: 27872.9 Da PI: 4.6396 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.9e-20 | 118 | 167 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r r +lg+f+taeeAa+a+++a+ +++g LPERR09G09240.1 118 VYRGVRQRP-WGKWAAEIRDPR----RaVRKWLGTFDTAEEAARAYDRAAVEFRG 167 69*******.**********82....48***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.97E-23 | 118 | 177 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-13 | 118 | 167 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.948 | 118 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-35 | 118 | 181 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-32 | 118 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.97E-32 | 119 | 175 | No hit | No description |
PRINTS | PR00367 | 1.6E-11 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-11 | 141 | 157 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MAAKQDSCKT NLDDHGGSQA SSSAQWISSE QEHGIIVAAL RHVLSGYTTP PPEIVTVACG 60 EKCALCGIDG CLGCDFFGAD AAADGPEETV IATDNARATA AAGGGGQLRV RRRRKKNVYR 120 GVRQRPWGKW AAEIRDPRRA VRKWLGTFDT AEEAARAYDR AAVEFRGARA KLNFPCSETL 180 LPFGNGGDAV TAAATGTATE VMTPATNSPC SADAEETAAV DWQLGVEDEA GSNQLWDSLQ 240 DLMKLDEPDI WFAPFSGAES SF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 115 | 176 | 2 | 64 | ATERF1 |
3gcc_A | 2e-21 | 115 | 176 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00469 | DAP | Transfer from AT4G34410 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G09240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067195 | 1e-140 | AK067195.1 Oryza sativa Japonica Group cDNA clone:J013098P10, full insert sequence. | |||
GenBank | AP005891 | 1e-140 | AP005891.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:B1045B05. | |||
GenBank | AP014965 | 1e-140 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015611044.2 | 1e-120 | ethylene-responsive transcription factor ERF109 | ||||
Swissprot | Q9SZ06 | 2e-29 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A0D9XEH5 | 0.0 | A0A0D9XEH5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G09240.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 2e-18 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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