![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR09G08060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 402aa MW: 43170.2 Da PI: 4.4789 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdps+ r++lg++ taeeAa+a++a ++k++g LPERR09G08060.1 137 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 186 69*******.**********965...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.10E-32 | 137 | 195 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-32 | 137 | 196 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.933 | 137 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.9E-37 | 137 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-22 | 137 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.8E-12 | 138 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 138 | 149 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 160 | 176 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 402 aa Download sequence Send to blast |
MCGGAIISGF IPPSAAAAAA AAKKRGRRVT ADVLWPGKSA AKAGRGFGVE EEDFEADFRE 60 FEMGLSEDEA EDGGEEEEDV VEVVSPPARL AVVAATKAAP AAATEVALPT ADGILTPKPV 120 QHDGPAARSA KRKRKNQYRG IRQRPWGKWA AEIRDPSKGV RVWLGTYNTA EEAARAYDAE 180 ARKIRGKKAK VNFPDESLVA QKPSLKQNAA KQEKLSPPLK TCDNDAFIPL NNADNDLFAM 240 FAFSDKNVPA KPVEPAGFLP PVNPLASTEA FEMNMLSDES SNSFGSSDFG WDDDTLTPDY 300 TSVFDPNSTV PAYGEPAYLP VGAPKRMRNN YGVAVPQGTG MPNLTQNMAP FDPEIKYLPL 360 PYVESSSDES MDSLLQNEAT QDGASNVGIW SLDDLFMAAG AY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-19 | 136 | 194 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 1e-19 | 137 | 194 | 5 | 63 | ATERF1 |
3gcc_A | 1e-19 | 137 | 194 | 5 | 63 | ATERF1 |
5wx9_A | 3e-19 | 137 | 196 | 14 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR09G08060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006660653.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0D9XE19 | 0.0 | A0A0D9XE19_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G08060.2 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11200 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 6e-27 | ERF family protein |