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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G02880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 209aa MW: 22936.9 Da PI: 6.115 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.6 | 5.6e-17 | 42 | 90 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r++ +g+W++eIrdp+ r r +lg+f+tae+Aa+a++a +++++g LPERR09G02880.1 42 YHGIRQRA-WGKWASEIRDPV----RgVRLWLGTFDTAEDAARAYDAEARRIHG 90 89***998.**********63....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-30 | 41 | 99 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-33 | 41 | 104 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.352 | 41 | 98 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-9 | 42 | 90 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-21 | 42 | 99 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.0E-10 | 42 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.41E-30 | 42 | 98 | No hit | No description |
PRINTS | PR00367 | 2.0E-10 | 64 | 80 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MCGGGHLIPK SNDMPAVAQA DERPRRVQRR PRRKRPSYAY EYHGIRQRAW GKWASEIRDP 60 VRGVRLWLGT FDTAEDAARA YDAEARRIHG RKAKTNFPSD EPPASTLCCL LCTVDDLATT 120 PSTSGGCDGH GRILLECCSD DVMDSLLAAA DDGGRITLEC CADDVMDSLL AGFDVSNSIM 180 DRDIWSLGSQ KPSSRMSTLA NLEQALLCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-18 | 42 | 98 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 33 | RPRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G02880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR720464 | 3e-45 | FR720464.1 Oryza eichingeri partial sub1C-1 like gene 2, bio material IRGC 101429. | |||
GenBank | HM117839 | 3e-45 | HM117839.1 Oryza rhizomatis hypothetical protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696560.1 | 4e-34 | PREDICTED: ethylene-responsive transcription factor RAP2-2-like | ||||
TrEMBL | A0A0D9XC41 | 1e-151 | A0A0D9XC41_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G02880.1 | 1e-152 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15200 | 13 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-19 | ERF family protein |