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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G10230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 22485.1 Da PI: 10.5982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.3 | 2.5e-10 | 21 | 64 | 4 | 51 |
AP2 4 kGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 +GV+++ grW++ rd + + r +lg+f + eeA +a++a+ LPERR08G10230.1 21 RGVYQRQ-PGRWAVDFRDHR---LNVRQWLGTFPSQEEALAAHDAFEA 64 9***999.9******99953...34********************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 12.787 | 19 | 78 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-4 | 19 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-9 | 20 | 68 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-11 | 21 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MRRAVASASA ATVGGKKGSL RGVYQRQPGR WAVDFRDHRL NVRQWLGTFP SQEEALAAHD 60 AFEAQVRASL AAAVPKAEID AGAGAGGAKI GHQPARRASG RKRQQKTSST ISAGAVKSTR 120 RAPRRRASGG GDKKQQKQSD DPTESSSTSA ALALEAAPAK NPFLLEDELA AEKDHRFGFG 180 LADLGHIPLP FLDGKDMDLH LTDTDLSSFF D |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G10230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025875765.1 | 5e-42 | ethylene-responsive transcription factor ERF073 | ||||
TrEMBL | A0A0D9X760 | 1e-148 | A0A0D9X760_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G10230.1 | 1e-149 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14003 | 20 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 5e-09 | ethylene-responsive element binding protein |