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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR07G19320.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 320aa MW: 35299.7 Da PI: 4.3869 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 104 | 154 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+G+r+++ +g+W+AeIrdps+ r++lg+f taeeAa a++ +++++g LPERR07G19320.2 104 THYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFATAEEAAMAYDVEARRIRG 154 68********.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.15E-30 | 104 | 164 | No hit | No description |
Pfam | PF00847 | 2.2E-11 | 104 | 154 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 105 | 163 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 9.3E-37 | 105 | 168 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 105 | 163 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.433 | 105 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 106 | 117 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 128 | 144 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0034059 | Biological Process | response to anoxia | ||||
GO:0071456 | Biological Process | cellular response to hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MCGGSIIGDL YSPVRRTVHA GDLWADTGKG KNGGDILKRK GSSWDFDVDV DDDDFEADFE 60 EFEDDYDDDD DDVVDFGHDD QESDMNSLKL AGLSSTKLSR KRKTHYRGIR QRPWGKWAAE 120 IRDPSKGVRV WLGTFATAEE AAMAYDVEAR RIRGKKAKVN FPTAAAAASK RPRRSPAAAT 180 EKPHKKKSQS SNRASSAGSS TGDDAAAVAA IDDGSVKLEL LSEMMTDSWL DAFELNDLER 240 LRETSNGGFG DQIQKVEAAV VADEFVYFDS YPSYVQMGYL DQGNSYENID ALFSGEAVLD 300 GVNIGGLWSF DDMPIEFRSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 105 | 162 | 5 | 63 | ATERF1 |
3gcc_A | 1e-22 | 105 | 162 | 5 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 103 | SRKRKT |
2 | 100 | 104 | KRKTH |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00230 | DAP | Transfer from AT1G72360 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR07G19320.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK061047 | 1e-129 | AK061047.1 Oryza sativa Japonica Group cDNA clone:006-205-F01, full insert sequence. | |||
GenBank | AK067060 | 1e-129 | AK067060.1 Oryza sativa Japonica Group cDNA clone:J013090P08, full insert sequence. | |||
GenBank | AK109360 | 1e-129 | AK109360.2 Oryza sativa Japonica Group cDNA clone:006-206-B03, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006657959.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor ERF073-like | ||||
Refseq | XP_015694870.1 | 1e-116 | PREDICTED: ethylene-responsive transcription factor ERF073-like | ||||
TrEMBL | A0A0D9X1I7 | 0.0 | A0A0D9X1I7_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR07G19320.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 1e-30 | ethylene-responsive element binding protein |