PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR07G10840.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family M-type_MADS
Protein Properties Length: 667aa    MW: 73111.2 Da    PI: 4.4127
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR07G10840.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.6e-111350239
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                     +ie+++ r +tfskRr+g++   + LS+L++a +av++
  LPERR07G10840.1 13 FIEDERDRDITFSKRRHGLFNAVSNLSILTGASIAVVM 50
                     8***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-6464IPR002100Transcription factor, MADS-box
CDDcd002661.67E-15771No hitNo description
SuperFamilySSF554556.41E-12872IPR002100Transcription factor, MADS-box
PfamPF003192.5E-141358IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.9651450IPR002100Transcription factor, MADS-box
PRINTSPR008328.9E-5200223No hitNo description
PRINTSPR008328.9E-5385404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MPPRRSRRTG TAFIEDERDR DITFSKRRHG LFNAVSNLSI LTGASIAVVM ENRARNKFHA  60
IGTPTVQAVV DAALSDNMEA TRPLVDEQQR ARLAPLENEL ARLKEEEESH KEKTQASKDR  120
YKEAKAEAEE NGGDDDDVAR MNRLLFSRPD DENLSLDEMK GLFAEMLQYQ KQARELVPSD  180
LGRRGGGDRL MLGSSSRARA PLPPPPPPPP RRQAANPVPW QPLQWPNLYR PRNQLLPAAE  240
GSIQNNSFPT FSMGPFSFGS QSQQAPPAHD NTQLAPLPQT LEQQGPLMQQ PFLFSDHAPT  300
VAAAPLPLQA PLHYQSSTVA AAPLPLQAPL QMPVENHFPQ GAPLLQVPFP FSGQASALAP  360
LPTPLQMMPT PRLQLSPLME EQFPLSDEAP RFAPIPAPSL MPVQPHFSHP PLPQEPLPLS  420
NPTGPALASA PMPAPLQNPV EDHFPLSPML QMQKLFDFSD QAPLFSPPPP SPLQTPMEAP  480
MPLEAPLIQQ PFQVPDQAPI HAPPQEPLQM PVDAHMPLNS PLVQEPFLHA PLHAPPQPAP  540
LQMPVEADLP PTAEAYNQEV AEQQHPPEGY ENYDHMFENI EPSQPLAAGA GDDNSFTALG  600
NGNDNPFNNQ QWSASPLYDG QFYMGTGIDD MGIVVGDHGG VAEDDWANVE ESSSSGLGND  660
IFDDLWF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR07G10840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9WYE90.0A0A0D9WYE9_9ORYZ; Uncharacterized protein
STRINGLPERR07G10840.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP155501117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-09AGAMOUS-like 61