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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR06G18300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 288aa MW: 31686.5 Da PI: 4.4403 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.8 | 5.6e-13 | 24 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y G r+++ +g++ AeIr p +++ +r++lg+f taeeAa a++aa++ ++g LPERR06G18300.1 24 KYWGARRRP-WGKYSAEIRNPLVGNREyQRVWLGTFKTAEEAAWAYDAAARVIHG 77 788999999.**********87766236**********************98886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-23 | 24 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-22 | 24 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-17 | 24 | 88 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-7 | 24 | 74 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.219 | 24 | 86 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 25 | 36 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-8 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MTMSSLAEQL KAYSQAAAAQ AKKKYWGARR RPWGKYSAEI RNPLVGNREY QRVWLGTFKT 60 AEEAAWAYDA AARVIHGDDH AKTNFPASSP TPKPDQIQDP NLRSMLLYFD LARFLRSNRH 120 TAGATTPVLP PPPPPAPAIA VPPPATVESE ISPVVEEVIA APAPAPEQVS EPETEKEKEK 180 EKGEVAGSEV APVIDDLFLE APIMSPEWGD IDLDYSSLLD DVPVYFQPSM FDDEPFEQQR 240 KKPKLVGDYT PTDSYEKMMI DIIGGFDDYM ASSSSSQHPA PGDGQAPQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-13 | 24 | 86 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR06G18300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9WSE0 | 0.0 | A0A0D9WSE0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR06G18300.1 | 0.0 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11190.1 | 2e-10 | ERF family protein |