PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G15480.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HSF
Protein Properties Length: 312aa    MW: 34797.2 Da    PI: 4.5821
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G15480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.51.8e-32431332101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl k++e++ed+e++ ++sw +  nsfvv+d++ fa  +Lp+ Fkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll 
  LPERR06G15480.1  43 FLVKTFEMVEDPETDAVVSWGAARNSFVVWDPHAFAAVLLPQNFKHSNFSSFLRQLNTYGFRKVSADR---------WEFANEDFLGGQHHLLA 127
                      9********************999******************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r++
  LPERR06G15480.1 128 NIRRRR 133
                      ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004157.7E-5339132IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.0E-3540132IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.76E-3240132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.5E-2943132IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-174366IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-178193IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.5E-1794106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MDYPTAVKQE EVEVVVLEDG DEPVAPVMPL PAAMGVGVRA PPFLVKTFEM VEDPETDAVV  60
SWGAARNSFV VWDPHAFAAV LLPQNFKHSN FSSFLRQLNT YGFRKVSADR WEFANEDFLG  120
GQHHLLANIR RRRGGVVSMA ATAAATRAVT GGGEAEVARL RRDKEALARE LARLRREQRD  180
AMAQLLDMER RVRSTERRQE QCTAFFARAL RSPDVLDTIA RRRHAAEGRK RPRMLRDGVA  240
FEALALDATA ALSDEGAVTT DMIWYELLGE EQAEIDDLVA SAAEVEPWEE MDEEEVEDLV  300
QQIDCLASPS SS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-23161327129Heat shock factor protein 1
5d5v_B2e-23161327129Heat shock factor protein 1
5d5v_D2e-23161327129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G15480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054561e-85AP005456.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0513E02.
GenBankAP0149621e-85AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126141e-85CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657062.11e-123PREDICTED: putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-114HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLA0A0D9WRB30.0A0A0D9WRB3_9ORYZ; Uncharacterized protein
STRINGLPERR06G15480.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.13e-52heat shock transcription factor A2