PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR06G13580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 304aa    MW: 32173.4 Da    PI: 4.4368
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR06G13580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.51.1e-27139195257
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57 
                       D+++WrKYGqK++kgs++pr+YYrC+s  +C ++k+ver++ dp++++ tY+g+H 
  LPERR06G13580.1 139 ADEWAWRKYGQKPIKGSPYPRGYYRCSSDkSCAARKQVERCRLDPSFLILTYTGSHS 195
                      69**************************99**************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-28128195IPR003657WRKY domain
PROSITE profilePS5081127.588133200IPR003657WRKY domain
SuperFamilySSF1182901.83E-23134196IPR003657WRKY domain
SMARTSM007746.3E-32138199IPR003657WRKY domain
PfamPF031061.6E-22140195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MDAGDAWWYG AGVNNWDLDA VVRFGCGGHV TPPPPPPPLP VLGDDDDAWL APLPDLAVTD  60
ADPVAALLAA SSAPAPPLPD SLQPPTVPST EETPPPPADT KQPSTGVARA GGGSRSSARR  120
KKRQVAKEVI RVAANGPAAD EWAWRKYGQK PIKGSPYPRG YYRCSSDKSC AARKQVERCR  180
LDPSFLILTY TGSHSGHDVP LHRNSLAGTT RLKHSTLPST ETAASSSHSQ SASTPLLTSS  240
SVEMVNNHGG GGEEEEDCDV VDGDAADNCM VVDYEDGEEE EAIQAVEWGT PMSDEVIAEG  300
GEWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-151402001674WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR06G13580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006656997.14e-86PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A0D9WQP20.0A0A0D9WQP2_9ORYZ; Uncharacterized protein
STRINGLPERR06G13580.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125622536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-35WRKY family protein