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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
LPERR06G13570.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family |
M-type_MADS |
Protein Properties |
Length: 397aa MW: 43208.4 Da PI: 10.4284 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
LPERR06G13570.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 65.7 | 4.6e-21 | 20 | 66 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
i++ +rqvtfskRr+g++KKA+EL +LC+a vav++fs+ ++++ +
LPERR06G13570.1 20 IDDVGRRQVTFSKRRHGLFKKASELATLCGAPVAVVVFSKADNVFAF 66
88999***********************************9998876 PP
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2 | SRF-TF | 61.2 | 1.2e-19 | 220 | 262 | 3 | 45 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
i++++ rqvtf+kRr+g++KKA+EL +LC+a vav+ fs+ g+
LPERR06G13570.1 220 IQDHTARQVTFTKRRQGMMKKASELATLCGAHVAVVAFSEVGN 262
899************************************9987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.7E-25 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.829 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.55E-23 | 11 | 82 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 12 | 66 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-21 | 20 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-23 | 210 | 285 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.675 | 210 | 270 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.2E-27 | 210 | 269 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 212 | 232 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-20 | 220 | 266 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 232 | 247 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-16 | 247 | 268 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009559 | Biological Process | embryo sac central cell differentiation |
GO:0043078 | Cellular Component | polar nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 397 aa
Download sequence Send
to blast |
MVRPRGRPSK GRQRIAIRHI DDVGRRQVTF SKRRHGLFKK ASELATLCGA PVAVVVFSKA 60 DNVFAFGDPT ASAVLRRYAP SSSPAPLSDA ASDAAGAAAP EELDSLRRAA EETKAQVASE 120 KARMRGVAEM ITRAVREGRE HWWDADVEAL GMAELPEFAR ALEALRGSVQ RQSNTMLAIA 180 TTTPPPLPAQ QESPELNQEE GATMVRPPSK GRQKIEMRYI QDHTARQVTF TKRRQGMMKK 240 ASELATLCGA HVAVVAFSEV GNAFGFGDPC ASAVLRRYAA ATLTDDADAA FSAATTGELD 300 ALRRATEETK VQMASEKARM SRVAGRIKRA VKPGRKHWWD ADVEALGMAE LPEFVRALEK 360 LRGSVKRQAE RMPAAATTTP PPLQCNGMIR LLDDVNL
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